Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdk5rap3Q99LM2 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdk5rap3Q99LM2 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Gm45417-201ENSMUST00000209533 758 ntBASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Cdk5rap3Q99LM2 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Cdk5rap3Q99LM2 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Gm38205-201ENSMUST00000192243 258 ntBASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Rarb-207ENSMUST00000225921 2756 ntBASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdk5rap3Q99LM2 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Gm43017-201ENSMUST00000198296 752 ntBASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdk5rap3Q99LM2 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Cdk5rap3Q99LM2 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Cdk5rap3Q99LM2 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Cdk5rap3Q99LM2 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 75.8 ms