Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Lsm1Q8VC85 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Lsm1Q8VC85 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Lsm1Q8VC85 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.77■□□□□ 0.44
Lsm1Q8VC85 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.77■□□□□ 0.44
Lsm1Q8VC85 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Lsm1Q8VC85 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.77■□□□□ 0.44
Lsm1Q8VC85 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.77■□□□□ 0.44
Lsm1Q8VC85 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Lsm1Q8VC85 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Lsm1Q8VC85 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Lsm1Q8VC85 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Lsm1Q8VC85 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Lsm1Q8VC85 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Lsm1Q8VC85 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lsm1Q8VC85 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.73■□□□□ 0.43
Lsm1Q8VC85 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lsm1Q8VC85 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Lsm1Q8VC85 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lsm1Q8VC85 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms