Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Ccdc40Q8BI79 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc40Q8BI79 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc40Q8BI79 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc40Q8BI79 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc40Q8BI79 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc40Q8BI79 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc40Q8BI79 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc40Q8BI79 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc40Q8BI79 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc40Q8BI79 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc40Q8BI79 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Gm38205-201ENSMUST00000192243 258 ntBASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc40Q8BI79 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc40Q8BI79 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc40Q8BI79 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Ccdc40Q8BI79 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc40Q8BI79 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Ccdc40Q8BI79 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ccdc40Q8BI79 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms