Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Col7a1Q63870 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col7a1Q63870 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col7a1Q63870 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col7a1Q63870 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Col7a1Q63870 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col7a1Q63870 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC15.56■□□□□ 0.08
Col7a1Q63870 Gm43073-201ENSMUST00000198200 1189 ntBASIC15.56■□□□□ 0.08
Col7a1Q63870 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col7a1Q63870 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col7a1Q63870 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC15.56■□□□□ 0.08
Col7a1Q63870 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Col7a1Q63870 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
Col7a1Q63870 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC15.55■□□□□ 0.08
Col7a1Q63870 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Col7a1Q63870 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Col7a1Q63870 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Col7a1Q63870 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC15.55■□□□□ 0.08
Col7a1Q63870 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC15.55■□□□□ 0.08
Col7a1Q63870 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col7a1Q63870 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.54■□□□□ 0.08
Col7a1Q63870 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.54■□□□□ 0.08
Col7a1Q63870 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC15.54■□□□□ 0.08
Col7a1Q63870 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC15.54■□□□□ 0.08
Col7a1Q63870 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC15.54■□□□□ 0.08
Col7a1Q63870 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC15.54■□□□□ 0.08
Col7a1Q63870 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col7a1Q63870 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC15.53■□□□□ 0.08
Col7a1Q63870 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC15.53■□□□□ 0.08
Col7a1Q63870 Gm27459-201ENSMUST00000184860 107 ntBASIC15.53■□□□□ 0.08
Col7a1Q63870 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 Birc2-201ENSMUST00000054878 378 ntBASIC15.53■□□□□ 0.08
Col7a1Q63870 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col7a1Q63870 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col7a1Q63870 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC15.52■□□□□ 0.08
Col7a1Q63870 Gm27463-201ENSMUST00000183569 57 ntBASIC15.52■□□□□ 0.08
Col7a1Q63870 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC15.52■□□□□ 0.08
Col7a1Q63870 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col7a1Q63870 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col7a1Q63870 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC15.52■□□□□ 0.08
Col7a1Q63870 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC15.52■□□□□ 0.07
Col7a1Q63870 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col7a1Q63870 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col7a1Q63870 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col7a1Q63870 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC15.51■□□□□ 0.07
Col7a1Q63870 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col7a1Q63870 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Col7a1Q63870 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col7a1Q63870 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col7a1Q63870 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col7a1Q63870 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col7a1Q63870 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col7a1Q63870 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Col7a1Q63870 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Col7a1Q63870 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC15.5■□□□□ 0.07
Col7a1Q63870 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col7a1Q63870 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC15.5■□□□□ 0.07
Col7a1Q63870 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC15.5■□□□□ 0.07
Col7a1Q63870 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms