Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Ift88Q61371 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Ift88Q61371 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ift88Q61371 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ift88Q61371 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.5■□□□□ 0.87
Ift88Q61371 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ift88Q61371 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Ift88Q61371 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.5■□□□□ 0.87
Ift88Q61371 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.5■□□□□ 0.87
Ift88Q61371 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ift88Q61371 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Ift88Q61371 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ift88Q61371 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ift88Q61371 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ift88Q61371 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ift88Q61371 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ift88Q61371 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ift88Q61371 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ift88Q61371 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
Ift88Q61371 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ift88Q61371 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ift88Q61371 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ift88Q61371 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ift88Q61371 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.49■□□□□ 0.87
Ift88Q61371 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Ift88Q61371 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ift88Q61371 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.48■□□□□ 0.87
Ift88Q61371 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Ift88Q61371 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.48■□□□□ 0.87
Ift88Q61371 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Gm12821-201ENSMUST00000120022 600 ntBASIC20.48■□□□□ 0.87
Ift88Q61371 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.48■□□□□ 0.87
Ift88Q61371 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Ift88Q61371 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ift88Q61371 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.47■□□□□ 0.87
Ift88Q61371 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Ift88Q61371 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ift88Q61371 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.46■□□□□ 0.87
Ift88Q61371 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
Ift88Q61371 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
Ift88Q61371 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Ift88Q61371 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ift88Q61371 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.45■□□□□ 0.87
Ift88Q61371 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ift88Q61371 Gm27454-201ENSMUST00000185090 204 ntBASIC20.45■□□□□ 0.86
Ift88Q61371 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.45■□□□□ 0.86
Ift88Q61371 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ift88Q61371 Gm40848-201ENSMUST00000221998 324 ntBASIC20.45■□□□□ 0.86
Ift88Q61371 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Ift88Q61371 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ift88Q61371 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Ift88Q61371 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ift88Q61371 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ift88Q61371 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ift88Q61371 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms