Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
Cln3Q61124 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.87
Cln3Q61124 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Cln3Q61124 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cln3Q61124 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cln3Q61124 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
Cln3Q61124 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cln3Q61124 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cln3Q61124 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cln3Q61124 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
Cln3Q61124 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Cln3Q61124 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC20.44■□□□□ 0.86
Cln3Q61124 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Cln3Q61124 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Gm5417-201ENSMUST00000079706 384 ntBASIC20.44■□□□□ 0.86
Cln3Q61124 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC20.44■□□□□ 0.86
Cln3Q61124 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cln3Q61124 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.44■□□□□ 0.86
Cln3Q61124 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cln3Q61124 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cln3Q61124 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cln3Q61124 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Cln3Q61124 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
Cln3Q61124 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cln3Q61124 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cln3Q61124 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
Cln3Q61124 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cln3Q61124 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Cln3Q61124 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Cln3Q61124 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cln3Q61124 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.43■□□□□ 0.86
Cln3Q61124 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cln3Q61124 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cln3Q61124 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Cln3Q61124 Golph3-202ENSMUST00000226517 2359 ntBASIC20.42■□□□□ 0.86
Cln3Q61124 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Cln3Q61124 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cln3Q61124 Gm11643-201ENSMUST00000119578 864 ntBASIC20.42■□□□□ 0.86
Cln3Q61124 Gm43183-201ENSMUST00000200632 547 ntBASIC20.42■□□□□ 0.86
Cln3Q61124 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC20.42■□□□□ 0.86
Cln3Q61124 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cln3Q61124 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cln3Q61124 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.42■□□□□ 0.86
Cln3Q61124 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cln3Q61124 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cln3Q61124 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
Cln3Q61124 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.41■□□□□ 0.86
Cln3Q61124 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Cln3Q61124 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Cln3Q61124 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cln3Q61124 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cln3Q61124 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cln3Q61124 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.4■□□□□ 0.86
Cln3Q61124 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cln3Q61124 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Cln3Q61124 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.4■□□□□ 0.86
Cln3Q61124 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
Cln3Q61124 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC20.4■□□□□ 0.86
Cln3Q61124 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cln3Q61124 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cln3Q61124 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Cln3Q61124 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cln3Q61124 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Cln3Q61124 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC20.39■□□□□ 0.85
Cln3Q61124 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cln3Q61124 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cln3Q61124 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Cln3Q61124 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Cln3Q61124 Gm43799-201ENSMUST00000201845 579 ntBASIC20.39■□□□□ 0.85
Cln3Q61124 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.39■□□□□ 0.85
Cln3Q61124 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cln3Q61124 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Cln3Q61124 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Cln3Q61124 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms