Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6d-4Q5R1I0 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6d-4Q5R1I0 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6d-4Q5R1I0 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6d-4Q5R1I0 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6d-4Q5R1I0 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6d-4Q5R1I0 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6d-4Q5R1I0 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Gm27011-201ENSMUST00000182352 972 ntBASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6d-4Q5R1I0 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6d-4Q5R1I0 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6d-4Q5R1I0 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6d-4Q5R1I0 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Gm12527-201ENSMUST00000117967 564 ntBASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Gm20049-201ENSMUST00000219950 730 ntBASIC15.53■□□□□ 0.08
Trav6d-4Q5R1I0 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms