Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Ccdc88bQ4QRL3 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.46
Ccdc88bQ4QRL3 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
Ccdc88bQ4QRL3 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC30.44■■■□□ 2.46
Ccdc88bQ4QRL3 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Ccdc88bQ4QRL3 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Ccdc88bQ4QRL3 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
Ccdc88bQ4QRL3 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Ccdc88bQ4QRL3 Gm37055-201ENSMUST00000191866 133 ntBASIC30.44■■■□□ 2.46
Ccdc88bQ4QRL3 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Ccdc88bQ4QRL3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
Ccdc88bQ4QRL3 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC30.43■■■□□ 2.46
Ccdc88bQ4QRL3 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
Ccdc88bQ4QRL3 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC30.43■■■□□ 2.46
Ccdc88bQ4QRL3 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
Ccdc88bQ4QRL3 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
Ccdc88bQ4QRL3 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
Ccdc88bQ4QRL3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
Ccdc88bQ4QRL3 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC30.42■■■□□ 2.46
Ccdc88bQ4QRL3 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
Ccdc88bQ4QRL3 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Ccdc88bQ4QRL3 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Mir5122-201ENSMUST00000175004 89 ntBASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Gm43545-201ENSMUST00000196765 2779 ntBASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
Ccdc88bQ4QRL3 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC30.4■■■□□ 2.46
Ccdc88bQ4QRL3 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
Ccdc88bQ4QRL3 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
Ccdc88bQ4QRL3 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
Ccdc88bQ4QRL3 Gm15565-201ENSMUST00000118890 427 ntBASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc88bQ4QRL3 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Ccdc88bQ4QRL3 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Ccdc88bQ4QRL3 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc88bQ4QRL3 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc88bQ4QRL3 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
Ccdc88bQ4QRL3 Krtap5-1-202ENSMUST00000188274 742 ntBASIC30.34■■■□□ 2.45
Ccdc88bQ4QRL3 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Ccdc88bQ4QRL3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Ccdc88bQ4QRL3 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Ccdc88bQ4QRL3 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ccdc88bQ4QRL3 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC30.33■■■□□ 2.45
Ccdc88bQ4QRL3 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Ccdc88bQ4QRL3 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ccdc88bQ4QRL3 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC30.33■■■□□ 2.45
Ccdc88bQ4QRL3 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ccdc88bQ4QRL3 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ccdc88bQ4QRL3 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC30.32■■■□□ 2.44
Ccdc88bQ4QRL3 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
Ccdc88bQ4QRL3 Gm38285-201ENSMUST00000192928 922 ntBASIC30.32■■■□□ 2.44
Ccdc88bQ4QRL3 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Ccdc88bQ4QRL3 Gm45560-201ENSMUST00000211492 1472 ntBASIC30.32■■■□□ 2.44
Ccdc88bQ4QRL3 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Ccdc88bQ4QRL3 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC30.32■■■□□ 2.44
Ccdc88bQ4QRL3 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC30.31■■■□□ 2.44
Ccdc88bQ4QRL3 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
Ccdc88bQ4QRL3 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Ccdc88bQ4QRL3 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Ccdc88bQ4QRL3 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Ccdc88bQ4QRL3 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC30.31■■■□□ 2.44
Ccdc88bQ4QRL3 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms