Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col28a1Q2UY11 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col28a1Q2UY11 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col28a1Q2UY11 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col28a1Q2UY11 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Gm7291-201ENSMUST00000199147 382 ntBASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.91■□□□□ 0.46
Col28a1Q2UY11 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col28a1Q2UY11 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Col28a1Q2UY11 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms