Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.19■□□□□ 0.98
Col2a1P28481 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col2a1P28481 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col2a1P28481 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.19■□□□□ 0.98
Col2a1P28481 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC21.19■□□□□ 0.98
Col2a1P28481 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col2a1P28481 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Col2a1P28481 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col2a1P28481 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col2a1P28481 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col2a1P28481 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Col2a1P28481 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col2a1P28481 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col2a1P28481 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col2a1P28481 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col2a1P28481 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col2a1P28481 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.18■□□□□ 0.98
Col2a1P28481 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Col2a1P28481 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col2a1P28481 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC21.17■□□□□ 0.98
Col2a1P28481 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC21.17■□□□□ 0.98
Col2a1P28481 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Col2a1P28481 Gm45560-201ENSMUST00000211492 1472 ntBASIC21.17■□□□□ 0.98
Col2a1P28481 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col2a1P28481 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col2a1P28481 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col2a1P28481 Mir5122-201ENSMUST00000175004 89 ntBASIC21.16■□□□□ 0.98
Col2a1P28481 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Col2a1P28481 Mir6982-201ENSMUST00000184354 68 ntBASIC21.16■□□□□ 0.98
Col2a1P28481 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.16■□□□□ 0.98
Col2a1P28481 Gm44544-201ENSMUST00000207052 1844 ntBASIC21.16■□□□□ 0.98
Col2a1P28481 Gm18025-201ENSMUST00000221733 862 ntBASIC21.16■□□□□ 0.98
Col2a1P28481 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col2a1P28481 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col2a1P28481 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col2a1P28481 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Mir6349-201ENSMUST00000184059 97 ntBASIC21.15■□□□□ 0.98
Col2a1P28481 Gm9484-201ENSMUST00000195892 1159 ntBASIC21.15■□□□□ 0.98
Col2a1P28481 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.15■□□□□ 0.98
Col2a1P28481 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col2a1P28481 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC21.14■□□□□ 0.98
Col2a1P28481 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC21.14■□□□□ 0.98
Col2a1P28481 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
Col2a1P28481 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC21.14■□□□□ 0.98
Col2a1P28481 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col2a1P28481 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col2a1P28481 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col2a1P28481 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col2a1P28481 Gm9194-201ENSMUST00000220749 1447 ntBASIC21.14■□□□□ 0.97
Col2a1P28481 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC21.13■□□□□ 0.97
Col2a1P28481 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col2a1P28481 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col2a1P28481 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.13■□□□□ 0.97
Col2a1P28481 BC021767-201ENSMUST00000126387 1716 ntBASIC21.13■□□□□ 0.97
Col2a1P28481 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Col2a1P28481 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Col2a1P28481 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col2a1P28481 Gm37055-201ENSMUST00000191866 133 ntBASIC21.13■□□□□ 0.97
Col2a1P28481 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col2a1P28481 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
Col2a1P28481 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col2a1P28481 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC21.12■□□□□ 0.97
Col2a1P28481 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.12■□□□□ 0.97
Col2a1P28481 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col2a1P28481 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col2a1P28481 Mir2861-201ENSMUST00000175539 82 ntBASIC21.12■□□□□ 0.97
Col2a1P28481 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
Col2a1P28481 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Col2a1P28481 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC21.12■□□□□ 0.97
Col2a1P28481 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC21.12■□□□□ 0.97
Col2a1P28481 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col2a1P28481 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col2a1P28481 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.12■□□□□ 0.97
Col2a1P28481 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC21.11■□□□□ 0.97
Col2a1P28481 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC21.11■□□□□ 0.97
Col2a1P28481 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC21.11■□□□□ 0.97
Col2a1P28481 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms