Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col1a1P11087 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col1a1P11087 Gm37292-201ENSMUST00000192062 758 ntBASIC21.86■■□□□ 1.09
Col1a1P11087 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col1a1P11087 Gm42545-201ENSMUST00000202755 922 ntBASIC21.86■■□□□ 1.09
Col1a1P11087 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC21.86■■□□□ 1.09
Col1a1P11087 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col1a1P11087 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Col1a1P11087 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col1a1P11087 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col1a1P11087 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col1a1P11087 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col1a1P11087 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col1a1P11087 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col1a1P11087 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC21.85■■□□□ 1.09
Col1a1P11087 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
Col1a1P11087 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col1a1P11087 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col1a1P11087 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Col1a1P11087 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col1a1P11087 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col1a1P11087 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Col1a1P11087 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.84■■□□□ 1.09
Col1a1P11087 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col1a1P11087 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC21.83■■□□□ 1.09
Col1a1P11087 Gm12382-201ENSMUST00000122005 922 ntBASIC21.83■■□□□ 1.09
Col1a1P11087 Gm38285-201ENSMUST00000192928 922 ntBASIC21.83■■□□□ 1.09
Col1a1P11087 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col1a1P11087 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC21.83■■□□□ 1.09
Col1a1P11087 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Col1a1P11087 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col1a1P11087 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Col1a1P11087 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.83■■□□□ 1.08
Col1a1P11087 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Col1a1P11087 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col1a1P11087 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col1a1P11087 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col1a1P11087 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC21.82■■□□□ 1.08
Col1a1P11087 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Col1a1P11087 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Col1a1P11087 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Col1a1P11087 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
Col1a1P11087 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col1a1P11087 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Gm7712-202ENSMUST00000222331 1510 ntBASIC21.81■■□□□ 1.08
Col1a1P11087 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Col1a1P11087 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Gm10459-201ENSMUST00000202708 1155 ntBASIC21.81■■□□□ 1.08
Col1a1P11087 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC21.81■■□□□ 1.08
Col1a1P11087 Otx2os1-204ENSMUST00000227221 751 ntBASIC21.81■■□□□ 1.08
Col1a1P11087 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Col1a1P11087 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
Col1a1P11087 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col1a1P11087 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC21.8■■□□□ 1.08
Col1a1P11087 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col1a1P11087 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
Col1a1P11087 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col1a1P11087 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col1a1P11087 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col1a1P11087 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col1a1P11087 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col1a1P11087 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.8■■□□□ 1.08
Col1a1P11087 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col1a1P11087 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col1a1P11087 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col1a1P11087 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Col1a1P11087 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col1a1P11087 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col1a1P11087 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col1a1P11087 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col1a1P11087 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col1a1P11087 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Col1a1P11087 Gm34220-201ENSMUST00000223001 2709 ntBASIC21.78■■□□□ 1.08
Col1a1P11087 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
Col1a1P11087 Mir6349-201ENSMUST00000184059 97 ntBASIC21.78■■□□□ 1.08
Col1a1P11087 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
Col1a1P11087 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Gm7367-201ENSMUST00000057611 492 ntBASIC21.78■■□□□ 1.08
Col1a1P11087 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Col1a1P11087 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms