Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Vti1aO89116 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vti1aO89116 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.96■□□□□ 0.79
Vti1aO89116 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
Vti1aO89116 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vti1aO89116 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.96■□□□□ 0.79
Vti1aO89116 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vti1aO89116 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Vti1aO89116 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
Vti1aO89116 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Vti1aO89116 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vti1aO89116 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Vti1aO89116 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vti1aO89116 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vti1aO89116 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vti1aO89116 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Vti1aO89116 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Vti1aO89116 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.95■□□□□ 0.78
Vti1aO89116 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Vti1aO89116 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Vti1aO89116 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vti1aO89116 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.95■□□□□ 0.78
Vti1aO89116 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Vti1aO89116 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vti1aO89116 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vti1aO89116 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vti1aO89116 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vti1aO89116 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vti1aO89116 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.94■□□□□ 0.78
Vti1aO89116 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Vti1aO89116 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Vti1aO89116 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vti1aO89116 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vti1aO89116 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.94■□□□□ 0.78
Vti1aO89116 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Vti1aO89116 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vti1aO89116 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vti1aO89116 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Vti1aO89116 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Vti1aO89116 Gm26524-201ENSMUST00000192339 390 ntBASIC19.93■□□□□ 0.78
Vti1aO89116 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vti1aO89116 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Vti1aO89116 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Vti1aO89116 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Vti1aO89116 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vti1aO89116 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Vti1aO89116 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.92■□□□□ 0.78
Vti1aO89116 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vti1aO89116 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vti1aO89116 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vti1aO89116 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vti1aO89116 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vti1aO89116 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.92■□□□□ 0.78
Vti1aO89116 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.92■□□□□ 0.78
Vti1aO89116 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.92■□□□□ 0.78
Vti1aO89116 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Vti1aO89116 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Vti1aO89116 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Vti1aO89116 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Vti1aO89116 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.9■□□□□ 0.78
Vti1aO89116 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Mir7071-201ENSMUST00000184847 69 ntBASIC19.9■□□□□ 0.78
Vti1aO89116 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Vti1aO89116 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.9■□□□□ 0.78
Vti1aO89116 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Vti1aO89116 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Vti1aO89116 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vti1aO89116 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Vti1aO89116 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.89■□□□□ 0.77
Vti1aO89116 Gm12896-201ENSMUST00000118430 226 ntBASIC19.89■□□□□ 0.77
Vti1aO89116 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Vti1aO89116 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.89■□□□□ 0.77
Vti1aO89116 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vti1aO89116 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms