Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lmx1bO88609 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Lmx1bO88609 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lmx1bO88609 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.76■□□□□ 0.27
Lmx1bO88609 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lmx1bO88609 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lmx1bO88609 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lmx1bO88609 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
Lmx1bO88609 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC16.76■□□□□ 0.27
Lmx1bO88609 Gm37352-201ENSMUST00000193908 2181 ntBASIC16.75■□□□□ 0.27
Lmx1bO88609 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Lmx1bO88609 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Lmx1bO88609 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Lmx1bO88609 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC16.75■□□□□ 0.27
Lmx1bO88609 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.75■□□□□ 0.27
Lmx1bO88609 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Gm20049-201ENSMUST00000219950 730 ntBASIC16.75■□□□□ 0.27
Lmx1bO88609 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC16.75■□□□□ 0.27
Lmx1bO88609 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Lmx1bO88609 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.74■□□□□ 0.27
Lmx1bO88609 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Lmx1bO88609 Gm26524-201ENSMUST00000192339 390 ntBASIC16.74■□□□□ 0.27
Lmx1bO88609 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.74■□□□□ 0.27
Lmx1bO88609 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Lmx1bO88609 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Lmx1bO88609 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Lmx1bO88609 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lmx1bO88609 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lmx1bO88609 Gm38342-201ENSMUST00000195710 2980 ntBASIC16.73■□□□□ 0.27
Lmx1bO88609 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC16.73■□□□□ 0.27
Lmx1bO88609 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC16.73■□□□□ 0.27
Lmx1bO88609 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC16.73■□□□□ 0.27
Lmx1bO88609 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lmx1bO88609 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC16.73■□□□□ 0.27
Lmx1bO88609 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
Lmx1bO88609 Gm18688-201ENSMUST00000204695 1859 ntBASIC16.73■□□□□ 0.27
Lmx1bO88609 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lmx1bO88609 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lmx1bO88609 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lmx1bO88609 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Lmx1bO88609 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC16.72■□□□□ 0.27
Lmx1bO88609 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16.72■□□□□ 0.27
Lmx1bO88609 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Lmx1bO88609 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 AC126028.2-201ENSMUST00000228100 1833 ntBASIC16.72■□□□□ 0.27
Lmx1bO88609 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lmx1bO88609 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Lmx1bO88609 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Lmx1bO88609 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Lmx1bO88609 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC16.71■□□□□ 0.27
Lmx1bO88609 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Lmx1bO88609 Gm20760-201ENSMUST00000179197 648 ntBASIC16.71■□□□□ 0.27
Lmx1bO88609 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Lmx1bO88609 Rab3c-203ENSMUST00000224180 967 ntBASIC16.71■□□□□ 0.27
Lmx1bO88609 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Lmx1bO88609 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Lmx1bO88609 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Lmx1bO88609 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Lmx1bO88609 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Lmx1bO88609 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Lmx1bO88609 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Lmx1bO88609 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms