Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Gm11249-201ENSMUST00000117071 859 ntBASIC15.84■□□□□ 0.13
Cldn1O88551 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC15.84■□□□□ 0.13
Cldn1O88551 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
Cldn1O88551 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Cldn1O88551 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 AC121577.1-201ENSMUST00000227302 707 ntBASIC15.84■□□□□ 0.13
Cldn1O88551 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC15.84■□□□□ 0.13
Cldn1O88551 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Cldn1O88551 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
Cldn1O88551 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cldn1O88551 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cldn1O88551 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
Cldn1O88551 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC15.83■□□□□ 0.12
Cldn1O88551 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC15.83■□□□□ 0.12
Cldn1O88551 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC15.83■□□□□ 0.12
Cldn1O88551 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Cldn1O88551 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
Cldn1O88551 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Cldn1O88551 Nrn1-203ENSMUST00000223611 1443 ntBASIC15.83■□□□□ 0.12
Cldn1O88551 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC15.83■□□□□ 0.12
Cldn1O88551 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cldn1O88551 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC15.82■□□□□ 0.12
Cldn1O88551 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC15.82■□□□□ 0.12
Cldn1O88551 AC152827.1-201ENSMUST00000221143 2189 ntBASIC15.82■□□□□ 0.12
Cldn1O88551 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Cldn1O88551 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Cdkn3-203ENSMUST00000227149 1952 ntBASIC15.82■□□□□ 0.12
Cldn1O88551 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cldn1O88551 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
Cldn1O88551 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Cldn1O88551 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Gm18666-201ENSMUST00000190039 958 ntBASIC15.81■□□□□ 0.12
Cldn1O88551 Gm43182-201ENSMUST00000199476 2528 ntBASIC15.81■□□□□ 0.12
Cldn1O88551 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC15.81■□□□□ 0.12
Cldn1O88551 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.81■□□□□ 0.12
Cldn1O88551 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC15.81■□□□□ 0.12
Cldn1O88551 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cldn1O88551 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
Cldn1O88551 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Cldn1O88551 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC15.8■□□□□ 0.12
Cldn1O88551 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC15.8■□□□□ 0.12
Cldn1O88551 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Cldn1O88551 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Cldn1O88551 Gm27032-201ENSMUST00000183124 1116 ntBASIC15.8■□□□□ 0.12
Cldn1O88551 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC15.8■□□□□ 0.12
Cldn1O88551 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Cldn1O88551 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cldn1O88551 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cldn1O88551 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cldn1O88551 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cldn1O88551 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Cldn1O88551 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 107 ms