Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Znrf1-210ENSMUST00000173781 337 ntTSL 3 BASIC11.6□□□□□ -0.55
Cux1P53564 Gm27360-201ENSMUST00000183487 80 ntBASIC11.6□□□□□ -0.55
Cux1P53564 Gm28266-201ENSMUST00000191410 439 ntBASIC11.6□□□□□ -0.55
Cux1P53564 Gm5086-201ENSMUST00000210022 1297 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Gm29154-205ENSMUST00000213325 1112 ntTSL 5 BASIC11.6□□□□□ -0.55
Cux1P53564 Gm46124-202ENSMUST00000217260 860 ntTSL 5 BASIC11.6□□□□□ -0.55
Cux1P53564 AC164424.3-201ENSMUST00000220809 148 ntBASIC11.6□□□□□ -0.55
Cux1P53564 AC166358.8-201ENSMUST00000223288 105 ntBASIC11.6□□□□□ -0.55
Cux1P53564 AC124739.1-201ENSMUST00000223433 148 ntBASIC11.6□□□□□ -0.55
Cux1P53564 AC154515.3-201ENSMUST00000225081 1159 ntBASIC11.6□□□□□ -0.55
Cux1P53564 4930542C16Rik-201ENSMUST00000062438 1090 ntTSL 2 BASIC11.6□□□□□ -0.55
Cux1P53564 Gm45737-201ENSMUST00000208344 1612 ntBASIC11.6□□□□□ -0.55
Cux1P53564 Rnf219-202ENSMUST00000227640 1632 ntAPPRIS ALT2 BASIC11.6□□□□□ -0.55
Cux1P53564 Zfp976-201ENSMUST00000098503 1976 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
Cux1P53564 Mcc-201ENSMUST00000089874 7858 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Skint7-201ENSMUST00000055014 1788 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Cd44-204ENSMUST00000111190 1412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Tmc2-201ENSMUST00000077988 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Gm14244-201ENSMUST00000155688 2410 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 4931406B18Rik-203ENSMUST00000163619 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Zfp317-201ENSMUST00000079042 1824 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
Cux1P53564 Anapc1-201ENSMUST00000014499 8942 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Musk-203ENSMUST00000098057 3422 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Ap2b1-205ENSMUST00000176430 3596 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Dysf-203ENSMUST00000113818 6571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Ctnnd1-217ENSMUST00000111691 5380 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Hipk2-207ENSMUST00000162359 3867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Myo18a-203ENSMUST00000092887 7304 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Gpr156-201ENSMUST00000061274 4581 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Tmc2-202ENSMUST00000166774 2667 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
Cux1P53564 Smim8-205ENSMUST00000108134 782 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
Cux1P53564 Gm11889-201ENSMUST00000118402 1079 ntBASIC11.6□□□□□ -0.55
Cux1P53564 1700086P04Rik-201ENSMUST00000149472 1009 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Trav21-dv12-201ENSMUST00000180938 360 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Cux1P53564 Gm28070-201ENSMUST00000191502 445 ntBASIC11.6□□□□□ -0.55
Cux1P53564 1110003F10Rik-201ENSMUST00000199441 767 ntBASIC11.6□□□□□ -0.55
Cux1P53564 AC113204.1-203ENSMUST00000219475 375 ntTSL 3 BASIC11.6□□□□□ -0.55
Cux1P53564 Gm18960-201ENSMUST00000222962 713 ntBASIC11.6□□□□□ -0.55
Cux1P53564 Olfr922-201ENSMUST00000051004 1132 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Cux1P53564 5430419D17Rik-203ENSMUST00000208921 7948 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Cux1P53564 Plec-217ENSMUST00000169438 14827 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cux1P53564 Gramd1b-214ENSMUST00000216821 7445 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 E230020D15Rik-201ENSMUST00000208097 5899 ntBASIC11.59□□□□□ -0.55
Cux1P53564 Nlgn1-205ENSMUST00000193603 11807 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Phc2-203ENSMUST00000106080 3885 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Gm17552-201ENSMUST00000181211 3877 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Tpd52l2-204ENSMUST00000108800 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Elovl2-202ENSMUST00000117096 3797 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Atg16l2-201ENSMUST00000120267 6459 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Vmn2r114-201ENSMUST00000168033 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 AC123842.1-201ENSMUST00000217622 3118 ntTSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 Fancl-201ENSMUST00000004120 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Ambra1-201ENSMUST00000045699 4690 ntTSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 Ndst3-207ENSMUST00000172537 3152 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 Ccdc114-203ENSMUST00000210602 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Gm44001-201ENSMUST00000203158 3773 ntBASIC11.59□□□□□ -0.55
Cux1P53564 Pecam1-203ENSMUST00000103069 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Pds5b-202ENSMUST00000038900 7315 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 Gm13485-201ENSMUST00000146690 659 ntTSL 2 BASIC11.59□□□□□ -0.55
Cux1P53564 Sh3bgr-207ENSMUST00000171181 678 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Gm9286-201ENSMUST00000173586 508 ntBASIC11.59□□□□□ -0.55
Cux1P53564 Gm27156-201ENSMUST00000184589 754 ntBASIC11.59□□□□□ -0.55
Cux1P53564 Gm20379-201ENSMUST00000188317 1204 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Cux1P53564 Tial1-214ENSMUST00000205835 562 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Gm44613-202ENSMUST00000205962 691 ntTSL 3 BASIC11.59□□□□□ -0.55
Cux1P53564 1700011B04Rik-205ENSMUST00000220995 831 ntTSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 4930471E15Rik-201ENSMUST00000221147 626 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Ndufa9-201ENSMUST00000088194 1238 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 Scn8a-213ENSMUST00000201549 7120 ntAPPRIS P5 TSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 Lrrc15-201ENSMUST00000064606 5310 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 Pcdh15-231ENSMUST00000177107 5696 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Cux1P53564 Hivep2-201ENSMUST00000015645 9763 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cux1P53564 4833427F10Rik-201ENSMUST00000172874 1475 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
Cux1P53564 Btn2a2-201ENSMUST00000041541 2226 ntTSL 2 BASIC11.58□□□□□ -0.55
Cux1P53564 Rims2-205ENSMUST00000227243 4760 ntAPPRIS ALT2 BASIC11.58□□□□□ -0.56
Cux1P53564 Arnt2-207ENSMUST00000208232 6047 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cux1P53564 Arf4-202ENSMUST00000112318 1367 ntTSL 5 BASIC11.58□□□□□ -0.56
Cux1P53564 Zhx1-203ENSMUST00000175805 4839 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Cux1P53564 Ttll4-202ENSMUST00000113678 3762 ntTSL 5 BASIC11.58□□□□□ -0.56
Cux1P53564 Gm20767-202ENSMUST00000225683 1427 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Cux1P53564 Tcaim-201ENSMUST00000052740 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cux1P53564 Gm12321-201ENSMUST00000121485 804 ntBASIC11.58□□□□□ -0.56
Cux1P53564 Gm14503-201ENSMUST00000130337 1164 ntBASIC11.58□□□□□ -0.56
Cux1P53564 Gm24057-201ENSMUST00000158616 302 ntBASIC11.58□□□□□ -0.56
Cux1P53564 Gm22642-201ENSMUST00000175352 252 ntBASIC11.58□□□□□ -0.56
Cux1P53564 Gm38256-201ENSMUST00000192097 950 ntTSL 5 BASIC11.58□□□□□ -0.56
Cux1P53564 Sox2ot-214ENSMUST00000198758 1286 ntTSL 2 BASIC11.58□□□□□ -0.56
Cux1P53564 Gm34474-201ENSMUST00000209645 356 ntTSL 5 BASIC11.58□□□□□ -0.56
Cux1P53564 AC153152.2-201ENSMUST00000223165 959 ntBASIC11.58□□□□□ -0.56
Cux1P53564 E130119H09Rik-201ENSMUST00000223176 978 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cux1P53564 Bach2-207ENSMUST00000171600 8493 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cux1P53564 Tgs1-201ENSMUST00000052712 4327 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cux1P53564 AC154522.1-201ENSMUST00000224647 1903 ntBASIC11.58□□□□□ -0.56
Cux1P53564 Arhgap32-206ENSMUST00000182802 5621 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Cux1P53564 Map4k4-209ENSMUST00000192509 3918 ntAPPRIS P3 TSL 2 BASIC11.58□□□□□ -0.56
Cux1P53564 Gprin2-203ENSMUST00000226613 10354 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Cux1P53564 Rbms3-212ENSMUST00000174868 2164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Cux1P53564 Fbxw10-201ENSMUST00000036085 3354 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Cux1P53564 Vmn1r86-204ENSMUST00000227700 5487 ntAPPRIS ALT2 BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms