Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tctex1d1-208ENSMUST00000223169 683 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
Hmgb3O54879 AC165260.2-202ENSMUST00000224998 631 ntBASIC6.18□□□□□ -1.42
Hmgb3O54879 Tssk4-203ENSMUST00000226497 1235 ntBASIC6.18□□□□□ -1.42
Hmgb3O54879 Tssk4-206ENSMUST00000228041 1217 ntBASIC6.18□□□□□ -1.42
Hmgb3O54879 Svs3b-201ENSMUST00000063132 1249 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Gm10123-201ENSMUST00000075723 490 ntBASIC6.18□□□□□ -1.42
Hmgb3O54879 Trim40-201ENSMUST00000087158 2117 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Vmn1r188-201ENSMUST00000091739 927 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
Hmgb3O54879 AC093022.3-201ENSMUST00000226569 1926 ntBASIC6.18□□□□□ -1.42
Hmgb3O54879 Olfr1199-203ENSMUST00000131038 2557 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
Hmgb3O54879 Gm9268-201ENSMUST00000166914 2586 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
Hmgb3O54879 Vmn2r62-201ENSMUST00000169130 2580 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
Hmgb3O54879 Gm9268-202ENSMUST00000173815 2565 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
Hmgb3O54879 Gm26876-201ENSMUST00000180875 2387 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Gm7364-201ENSMUST00000188760 1501 ntBASIC6.18□□□□□ -1.42
Hmgb3O54879 Tm4sf20-201ENSMUST00000027331 1508 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Klhl13-202ENSMUST00000115313 3251 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Nol8-203ENSMUST00000221142 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Olfr329-ps-201ENSMUST00000108822 1300 ntAPPRIS ALT2 TSL 3 BASIC6.18□□□□□ -1.42
Hmgb3O54879 Gzmk-202ENSMUST00000122399 1304 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Chn1-202ENSMUST00000102677 3760 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Chd6-201ENSMUST00000039782 10515 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 Gm19337-201ENSMUST00000218100 1584 ntBASIC6.18□□□□□ -1.42
Hmgb3O54879 Tet1-201ENSMUST00000050826 13986 ntAPPRIS P3 TSL 5 BASIC6.18□□□□□ -1.42
Hmgb3O54879 Olfr115-203ENSMUST00000223366 2273 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
Hmgb3O54879 Ppp3cc-203ENSMUST00000228911 1836 ntAPPRIS ALT2 BASIC6.18□□□□□ -1.42
Hmgb3O54879 E330018M18Rik-201ENSMUST00000209455 1383 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Hmgb3O54879 AC107763.1-201ENSMUST00000226082 1365 ntBASIC6.18□□□□□ -1.42
Hmgb3O54879 Gm16233-201ENSMUST00000136170 1623 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Il1f9-201ENSMUST00000057567 1648 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Cnot1-202ENSMUST00000098473 8390 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Rasgrp3-201ENSMUST00000095204 4657 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm42885-201ENSMUST00000200763 4214 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Lipk-201ENSMUST00000054260 2125 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 4930590J08Rik-203ENSMUST00000205686 3395 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 C130083A15Rik-201ENSMUST00000205707 1460 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 1810011H11Rik-201ENSMUST00000039191 1489 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Exoc2-201ENSMUST00000021785 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Ttll4-202ENSMUST00000113678 3762 ntTSL 5 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Trav15-2-dv6-2-201ENSMUST00000103660 370 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm3618-201ENSMUST00000112726 384 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Lyzl1-202ENSMUST00000120837 652 ntTSL 3 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Fam187b-202ENSMUST00000128384 1244 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
Hmgb3O54879 A630023P12Rik-202ENSMUST00000141420 495 ntTSL 2 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Vmn1r169-201ENSMUST00000170290 915 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm21965-201ENSMUST00000177770 384 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm5435-201ENSMUST00000179295 1150 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm11109-201ENSMUST00000180289 384 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm27043-201ENSMUST00000182807 958 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Kif4-ps-202ENSMUST00000185083 652 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm28722-201ENSMUST00000187630 1036 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Nanog-ps1-201ENSMUST00000188967 250 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Olfr318-201ENSMUST00000189911 1026 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm8388-201ENSMUST00000193000 756 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm43787-201ENSMUST00000197792 1037 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Kmt5a-212ENSMUST00000198451 1032 ntTSL 3 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm44777-203ENSMUST00000206930 571 ntTSL 3 BASIC6.17□□□□□ -1.42
Hmgb3O54879 AC153821.1-203ENSMUST00000218105 607 ntTSL 3 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm7239-201ENSMUST00000220981 860 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 4930473H19Rik-202ENSMUST00000222124 1000 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 AC123058.1-201ENSMUST00000223748 437 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 AC126939.2-201ENSMUST00000225989 307 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Defb12-201ENSMUST00000062113 1003 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Fabp3-ps1-201ENSMUST00000070435 402 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Fabp5l2-201ENSMUST00000072582 408 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm23037-201ENSMUST00000083874 324 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Olfr417-201ENSMUST00000085862 930 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Rab25-201ENSMUST00000008745 1081 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Olfr659-201ENSMUST00000098170 969 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Zfp599-201ENSMUST00000086281 3574 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Vmn1r202-202ENSMUST00000228020 5441 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm839-201ENSMUST00000079186 1843 ntTSL 2 BASIC6.17□□□□□ -1.42
Hmgb3O54879 2610203C20Rik-215ENSMUST00000212373 1574 ntTSL 5 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Atp13a4-208ENSMUST00000182627 4238 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Pde4b-204ENSMUST00000106901 2129 ntTSL 2 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Zfp663-202ENSMUST00000103085 3451 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Phc3-204ENSMUST00000108255 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 D030045P18Rik-201ENSMUST00000213245 1892 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm21671-201ENSMUST00000162387 2421 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Hmgb3O54879 Mir124-2hg-201ENSMUST00000185804 3844 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm44441-201ENSMUST00000203642 2475 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 4930480K23Rik-201ENSMUST00000180465 3326 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Usp47-202ENSMUST00000210309 5816 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Gm42898-201ENSMUST00000200370 3073 ntBASIC6.17□□□□□ -1.42
Hmgb3O54879 Tdrd7-202ENSMUST00000107777 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
Hmgb3O54879 Ptprc-204ENSMUST00000182755 4611 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Hmgb3O54879 Gm26705-201ENSMUST00000180761 1457 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Hmgb3O54879 Gm44249-201ENSMUST00000204538 1805 ntBASIC6.16□□□□□ -1.42
Hmgb3O54879 Pcdh15-211ENSMUST00000126920 6866 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
Hmgb3O54879 Gm28649-201ENSMUST00000189153 1581 ntBASIC6.16□□□□□ -1.42
Hmgb3O54879 4930555A03Rik-201ENSMUST00000196052 1556 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Hmgb3O54879 Cxcl5-201ENSMUST00000031318 1575 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
Hmgb3O54879 Zranb1-201ENSMUST00000033265 2210 ntAPPRIS P2 TSL 2 BASIC6.16□□□□□ -1.42
Hmgb3O54879 Serpina3c-201ENSMUST00000085050 2213 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Hmgb3O54879 Dtwd1-201ENSMUST00000110437 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Hmgb3O54879 Fate1-202ENSMUST00000114569 1053 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
Hmgb3O54879 Gm14278-201ENSMUST00000117381 878 ntBASIC6.16□□□□□ -1.42
Hmgb3O54879 Gm14143-201ENSMUST00000121686 357 ntBASIC6.16□□□□□ -1.42
Hmgb3O54879 Gm15501-202ENSMUST00000140687 625 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms