Protein–RNA interactions for Protein: Q9EQH3

Vps35, Vacuolar protein sorting-associated protein 35, mousemouse

Known RBP Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps35Q9EQH3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps35Q9EQH3 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 AC164629.5-201ENSMUST00000220387 632 ntBASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vps35Q9EQH3 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vps35Q9EQH3 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 BC021767-201ENSMUST00000126387 1716 ntBASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Vps35Q9EQH3 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Gm37179-201ENSMUST00000194862 823 ntBASIC18.53■□□□□ 0.56
Vps35Q9EQH3 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
Vps35Q9EQH3 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Vps35Q9EQH3 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Vps35Q9EQH3 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Vps35Q9EQH3 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Vps35Q9EQH3 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Vps35Q9EQH3 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
Vps35Q9EQH3 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Vps35Q9EQH3 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Vps35Q9EQH3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Gm6420-201ENSMUST00000193885 723 ntBASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Vps35Q9EQH3 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms