Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Ddx28Q9CWT6 Gm43173-201ENSMUST00000202246 593 ntBASIC17.35■□□□□ 0.37
Ddx28Q9CWT6 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Ddx28Q9CWT6 AC165080.2-201ENSMUST00000217491 1530 ntBASIC17.35■□□□□ 0.37
Ddx28Q9CWT6 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC17.35■□□□□ 0.37
Ddx28Q9CWT6 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx28Q9CWT6 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx28Q9CWT6 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx28Q9CWT6 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx28Q9CWT6 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Ddx28Q9CWT6 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.33■□□□□ 0.37
Ddx28Q9CWT6 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Ddx28Q9CWT6 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx28Q9CWT6 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Ddx28Q9CWT6 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx28Q9CWT6 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx28Q9CWT6 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Gm8493-201ENSMUST00000196881 489 ntBASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx28Q9CWT6 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Smad6-203ENSMUST00000179458 273 ntBASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.31■□□□□ 0.36
Ddx28Q9CWT6 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx28Q9CWT6 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Gm6139-201ENSMUST00000079261 882 ntBASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx28Q9CWT6 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms