Protein–RNA interactions for Protein: Q920F6

Smc1b, Structural maintenance of chromosomes protein 1B, mousemouse

Predictions only

Length 1,248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1bQ920F6 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Smc1bQ920F6 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Smc1bQ920F6 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.35■■□□□ 1.01
Smc1bQ920F6 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.34■■□□□ 1.01
Smc1bQ920F6 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.34■■□□□ 1.01
Smc1bQ920F6 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1bQ920F6 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Smc1bQ920F6 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1bQ920F6 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1bQ920F6 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1bQ920F6 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC21.33■■□□□ 1.01
Smc1bQ920F6 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1bQ920F6 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Smc1bQ920F6 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1bQ920F6 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
Smc1bQ920F6 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.33■■□□□ 1
Smc1bQ920F6 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Smc1bQ920F6 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.33■■□□□ 1
Smc1bQ920F6 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Smc1bQ920F6 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
Smc1bQ920F6 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC21.32■■□□□ 1
Smc1bQ920F6 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC21.32■■□□□ 1
Smc1bQ920F6 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.32■■□□□ 1
Smc1bQ920F6 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1bQ920F6 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC21.31■■□□□ 1
Smc1bQ920F6 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1bQ920F6 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Smc1bQ920F6 Gm5643-201ENSMUST00000117081 966 ntBASIC21.31■■□□□ 1
Smc1bQ920F6 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Smc1bQ920F6 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC21.31■■□□□ 1
Smc1bQ920F6 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1bQ920F6 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC21.31■■□□□ 1
Smc1bQ920F6 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC21.31■■□□□ 1
Smc1bQ920F6 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC21.31■■□□□ 1
Smc1bQ920F6 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
Smc1bQ920F6 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.31■■□□□ 1
Smc1bQ920F6 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.31■■□□□ 1
Smc1bQ920F6 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Smc1bQ920F6 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC21.31■■□□□ 1
Smc1bQ920F6 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smc1bQ920F6 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Smc1bQ920F6 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smc1bQ920F6 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Smc1bQ920F6 Krtap5-1-202ENSMUST00000188274 742 ntBASIC21.3■■□□□ 1
Smc1bQ920F6 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smc1bQ920F6 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC21.3■■□□□ 1
Smc1bQ920F6 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC21.3■■□□□ 1
Smc1bQ920F6 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Smc1bQ920F6 Gm37563-201ENSMUST00000192580 1513 ntBASIC21.29■■□□□ 1
Smc1bQ920F6 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC21.29■■□□□ 1
Smc1bQ920F6 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Smc1bQ920F6 Gm12896-201ENSMUST00000118430 226 ntBASIC21.29■■□□□ 1
Smc1bQ920F6 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC21.29■■□□□ 1
Smc1bQ920F6 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.29■■□□□ 1
Smc1bQ920F6 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1bQ920F6 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Smc1bQ920F6 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1bQ920F6 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Smc1bQ920F6 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
Smc1bQ920F6 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC21.28■■□□□ 1
Smc1bQ920F6 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1bQ920F6 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1bQ920F6 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1bQ920F6 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1bQ920F6 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1bQ920F6 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms