Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Lsm1Q8VC85 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Lsm1Q8VC85 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Lsm1Q8VC85 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Lsm1Q8VC85 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Lsm1Q8VC85 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.83■□□□□ 0.45
Lsm1Q8VC85 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Lsm1Q8VC85 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.83■□□□□ 0.44
Lsm1Q8VC85 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Lsm1Q8VC85 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Rarb-207ENSMUST00000225921 2756 ntBASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Lsm1Q8VC85 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Gm43060-201ENSMUST00000200621 289 ntBASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.8■□□□□ 0.44
Lsm1Q8VC85 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Lsm1Q8VC85 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Lsm1Q8VC85 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms