Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Usp47Q8BY87 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
Usp47Q8BY87 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Usp47Q8BY87 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Usp47Q8BY87 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Usp47Q8BY87 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Gm9885-202ENSMUST00000186234 2209 ntBASIC26.42■■□□□ 1.82
Usp47Q8BY87 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Usp47Q8BY87 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
Usp47Q8BY87 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC26.41■■□□□ 1.82
Usp47Q8BY87 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Gm5784-201ENSMUST00000179344 2478 ntBASIC26.41■■□□□ 1.82
Usp47Q8BY87 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Usp47Q8BY87 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC26.4■■□□□ 1.82
Usp47Q8BY87 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC26.4■■□□□ 1.82
Usp47Q8BY87 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC26.4■■□□□ 1.82
Usp47Q8BY87 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
Usp47Q8BY87 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Usp47Q8BY87 Gm12896-201ENSMUST00000118430 226 ntBASIC26.4■■□□□ 1.82
Usp47Q8BY87 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC26.4■■□□□ 1.82
Usp47Q8BY87 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Usp47Q8BY87 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
Usp47Q8BY87 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Usp47Q8BY87 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Usp47Q8BY87 AC107452.1-201ENSMUST00000227963 481 ntBASIC26.39■■□□□ 1.82
Usp47Q8BY87 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Usp47Q8BY87 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Usp47Q8BY87 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.81
Usp47Q8BY87 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Usp47Q8BY87 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Usp47Q8BY87 Dio3-201ENSMUST00000097228 1449 ntBASIC26.38■■□□□ 1.81
Usp47Q8BY87 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Usp47Q8BY87 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Usp47Q8BY87 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC26.38■■□□□ 1.81
Usp47Q8BY87 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Usp47Q8BY87 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC26.38■■□□□ 1.81
Usp47Q8BY87 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Usp47Q8BY87 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Trmt13-210ENSMUST00000198454 880 ntBASIC26.37■■□□□ 1.81
Usp47Q8BY87 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp47Q8BY87 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Usp47Q8BY87 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Usp47Q8BY87 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Usp47Q8BY87 Gm2559-201ENSMUST00000201323 363 ntBASIC26.36■■□□□ 1.81
Usp47Q8BY87 AC135637.1-201ENSMUST00000227750 365 ntBASIC26.36■■□□□ 1.81
Usp47Q8BY87 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Usp47Q8BY87 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
Usp47Q8BY87 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
Usp47Q8BY87 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
Usp47Q8BY87 Gm20760-201ENSMUST00000179197 648 ntBASIC26.35■■□□□ 1.81
Usp47Q8BY87 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Usp47Q8BY87 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Usp47Q8BY87 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Usp47Q8BY87 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Usp47Q8BY87 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Gm44878-201ENSMUST00000205812 1295 ntBASIC26.34■■□□□ 1.81
Usp47Q8BY87 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp47Q8BY87 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC26.33■■□□□ 1.81
Usp47Q8BY87 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Usp47Q8BY87 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Usp47Q8BY87 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Usp47Q8BY87 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Usp47Q8BY87 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms