Protein–RNA interactions for Protein: Q6VGS5

Ccdc88c, Protein Daple, mousemouse

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88cQ6VGS5 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc88cQ6VGS5 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc88cQ6VGS5 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc88cQ6VGS5 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc88cQ6VGS5 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.73■□□□□ 0.91
Ccdc88cQ6VGS5 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc88cQ6VGS5 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.73■□□□□ 0.91
Ccdc88cQ6VGS5 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc88cQ6VGS5 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc88cQ6VGS5 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc88cQ6VGS5 Gm2399-201ENSMUST00000104944 225 ntBASIC20.72■□□□□ 0.91
Ccdc88cQ6VGS5 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc88cQ6VGS5 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc88cQ6VGS5 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc88cQ6VGS5 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc88cQ6VGS5 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Gm5643-201ENSMUST00000117081 966 ntBASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc88cQ6VGS5 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 Gm13168-201ENSMUST00000121771 632 ntBASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.7■□□□□ 0.9
Ccdc88cQ6VGS5 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88cQ6VGS5 Gm27275-201ENSMUST00000184318 272 ntBASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Gm44549-201ENSMUST00000208351 577 ntBASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc88cQ6VGS5 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Gm20760-201ENSMUST00000179197 648 ntBASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20.67■□□□□ 0.9
Ccdc88cQ6VGS5 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88cQ6VGS5 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88cQ6VGS5 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.65■□□□□ 0.9
Ccdc88cQ6VGS5 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88cQ6VGS5 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88cQ6VGS5 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88cQ6VGS5 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms