Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.27■□□□□ 0.36
ShhQ62226 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ShhQ62226 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.27■□□□□ 0.36
ShhQ62226 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.27■□□□□ 0.36
ShhQ62226 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.27■□□□□ 0.36
ShhQ62226 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ShhQ62226 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ShhQ62226 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.26■□□□□ 0.35
ShhQ62226 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.26■□□□□ 0.35
ShhQ62226 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC17.26■□□□□ 0.35
ShhQ62226 Trmt13-210ENSMUST00000198454 880 ntBASIC17.26■□□□□ 0.35
ShhQ62226 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Golph3-205ENSMUST00000228671 2842 ntBASIC17.26■□□□□ 0.35
ShhQ62226 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ShhQ62226 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.25■□□□□ 0.35
ShhQ62226 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ShhQ62226 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.25■□□□□ 0.35
ShhQ62226 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.25■□□□□ 0.35
ShhQ62226 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.25■□□□□ 0.35
ShhQ62226 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.25■□□□□ 0.35
ShhQ62226 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
ShhQ62226 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
ShhQ62226 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ShhQ62226 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.25■□□□□ 0.35
ShhQ62226 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
ShhQ62226 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
ShhQ62226 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
ShhQ62226 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.24■□□□□ 0.35
ShhQ62226 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.24■□□□□ 0.35
ShhQ62226 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.24■□□□□ 0.35
ShhQ62226 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ShhQ62226 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
ShhQ62226 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ShhQ62226 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
ShhQ62226 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ShhQ62226 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ShhQ62226 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ShhQ62226 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
ShhQ62226 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
ShhQ62226 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
ShhQ62226 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ShhQ62226 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
ShhQ62226 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShhQ62226 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShhQ62226 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.21■□□□□ 0.35
ShhQ62226 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ShhQ62226 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
ShhQ62226 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
ShhQ62226 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.21■□□□□ 0.35
ShhQ62226 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC17.21■□□□□ 0.35
ShhQ62226 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.21■□□□□ 0.35
ShhQ62226 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms