Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3bQ3ULL6 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Upf3bQ3ULL6 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3bQ3ULL6 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upf3bQ3ULL6 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upf3bQ3ULL6 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Upf3bQ3ULL6 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Upf3bQ3ULL6 Gm37179-201ENSMUST00000194862 823 ntBASIC19.84■□□□□ 0.77
Upf3bQ3ULL6 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Upf3bQ3ULL6 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.84■□□□□ 0.77
Upf3bQ3ULL6 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Upf3bQ3ULL6 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Upf3bQ3ULL6 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Upf3bQ3ULL6 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Upf3bQ3ULL6 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.83■□□□□ 0.76
Upf3bQ3ULL6 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Upf3bQ3ULL6 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms