Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Ush2AQ2QI47 Gm8097-201ENSMUST00000117903 829 ntBASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
Ush2AQ2QI47 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Gm37415-201ENSMUST00000192265 2054 ntBASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Gm45560-201ENSMUST00000211492 1472 ntBASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Ush2AQ2QI47 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Gm23935-201ENSMUST00000102303 57 ntBASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Gm24270-201ENSMUST00000102326 57 ntBASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Gm24245-201ENSMUST00000157318 57 ntBASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Ush2AQ2QI47 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Gm26971-201ENSMUST00000182423 1072 ntBASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Gm15375-201ENSMUST00000119510 849 ntBASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Ush2AQ2QI47 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Ush2AQ2QI47 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms