Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Cdx2P43241 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Cdx2P43241 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.74■□□□□ 0.43
Cdx2P43241 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Cdx2P43241 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdx2P43241 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Gm5417-201ENSMUST00000079706 384 ntBASIC17.73■□□□□ 0.43
Cdx2P43241 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdx2P43241 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Cdx2P43241 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdx2P43241 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx2P43241 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
Cdx2P43241 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC17.71■□□□□ 0.43
Cdx2P43241 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx2P43241 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx2P43241 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.71■□□□□ 0.43
Cdx2P43241 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx2P43241 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdx2P43241 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Cdx2P43241 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cdx2P43241 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cdx2P43241 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Cdx2P43241 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cdx2P43241 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.7■□□□□ 0.42
Cdx2P43241 Mtag2-201ENSMUST00000058665 714 ntBASIC17.7■□□□□ 0.42
Cdx2P43241 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Cdx2P43241 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cdx2P43241 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Cdx2P43241 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.69■□□□□ 0.42
Cdx2P43241 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.69■□□□□ 0.42
Cdx2P43241 AC175538.1-201ENSMUST00000225343 1269 ntBASIC17.69■□□□□ 0.42
Cdx2P43241 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cdx2P43241 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Cdx2P43241 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx2P43241 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx2P43241 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx2P43241 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Cdx2P43241 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Cdx2P43241 Gm43799-201ENSMUST00000201845 579 ntBASIC17.68■□□□□ 0.42
Cdx2P43241 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.68■□□□□ 0.42
Cdx2P43241 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx2P43241 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx2P43241 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx2P43241 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Cdx2P43241 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cdx2P43241 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx2P43241 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Cdx2P43241 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx2P43241 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx2P43241 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Cdx2P43241 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx2P43241 Gm6433-201ENSMUST00000118634 875 ntBASIC17.67■□□□□ 0.42
Cdx2P43241 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.67■□□□□ 0.42
Cdx2P43241 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cdx2P43241 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms