Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.29■□□□□ 0.68
Cxcl12P40224 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cxcl12P40224 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Cxcl12P40224 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cxcl12P40224 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cxcl12P40224 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cxcl12P40224 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cxcl12P40224 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cxcl12P40224 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cxcl12P40224 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Cxcl12P40224 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cxcl12P40224 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cxcl12P40224 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cxcl12P40224 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cxcl12P40224 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.28■□□□□ 0.68
Cxcl12P40224 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cxcl12P40224 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cxcl12P40224 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.28■□□□□ 0.68
Cxcl12P40224 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cxcl12P40224 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Cxcl12P40224 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cxcl12P40224 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cxcl12P40224 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cxcl12P40224 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cxcl12P40224 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Cxcl12P40224 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cxcl12P40224 Gm23634-201ENSMUST00000175071 91 ntBASIC19.27■□□□□ 0.68
Cxcl12P40224 Gm42545-201ENSMUST00000202755 922 ntBASIC19.27■□□□□ 0.68
Cxcl12P40224 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cxcl12P40224 Zfp783-201ENSMUST00000095946 670 ntBASIC19.27■□□□□ 0.68
Cxcl12P40224 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cxcl12P40224 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Cxcl12P40224 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cxcl12P40224 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Cxcl12P40224 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.27■□□□□ 0.67
Cxcl12P40224 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Cxcl12P40224 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cxcl12P40224 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cxcl12P40224 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Cxcl12P40224 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC19.26■□□□□ 0.67
Cxcl12P40224 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cxcl12P40224 Gm3375-201ENSMUST00000203929 796 ntBASIC19.26■□□□□ 0.67
Cxcl12P40224 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cxcl12P40224 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cxcl12P40224 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cxcl12P40224 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.26■□□□□ 0.67
Cxcl12P40224 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Cxcl12P40224 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.25■□□□□ 0.67
Cxcl12P40224 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cxcl12P40224 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cxcl12P40224 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cxcl12P40224 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cxcl12P40224 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cxcl12P40224 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.25■□□□□ 0.67
Cxcl12P40224 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.25■□□□□ 0.67
Cxcl12P40224 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cxcl12P40224 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC19.25■□□□□ 0.67
Cxcl12P40224 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cxcl12P40224 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.25■□□□□ 0.67
Cxcl12P40224 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cxcl12P40224 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cxcl12P40224 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Cxcl12P40224 Gm15375-201ENSMUST00000119510 849 ntBASIC19.24■□□□□ 0.67
Cxcl12P40224 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cxcl12P40224 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cxcl12P40224 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cxcl12P40224 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cxcl12P40224 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cxcl12P40224 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.24■□□□□ 0.67
Cxcl12P40224 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Gm18959-201ENSMUST00000208954 655 ntBASIC19.23■□□□□ 0.67
Cxcl12P40224 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cxcl12P40224 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Gm10013-201ENSMUST00000106074 672 ntBASIC19.22■□□□□ 0.67
Cxcl12P40224 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.22■□□□□ 0.67
Cxcl12P40224 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.22■□□□□ 0.67
Cxcl12P40224 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.22■□□□□ 0.67
Cxcl12P40224 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cxcl12P40224 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.22■□□□□ 0.67
Cxcl12P40224 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cxcl12P40224 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cxcl12P40224 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cxcl12P40224 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cxcl12P40224 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cxcl12P40224 AA414768-201ENSMUST00000121924 1257 ntBASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms