Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
Msx1P13297 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Msx1P13297 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Msx1P13297 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Msx1P13297 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Msx1P13297 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.59■□□□□ 0.41
Msx1P13297 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.59■□□□□ 0.41
Msx1P13297 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.59■□□□□ 0.41
Msx1P13297 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Msx1P13297 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Msx1P13297 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Msx1P13297 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msx1P13297 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
Msx1P13297 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msx1P13297 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msx1P13297 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msx1P13297 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.58■□□□□ 0.41
Msx1P13297 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Msx1P13297 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msx1P13297 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
Msx1P13297 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Msx1P13297 Gm13534-201ENSMUST00000121169 513 ntBASIC17.58■□□□□ 0.4
Msx1P13297 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Msx1P13297 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msx1P13297 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.58■□□□□ 0.4
Msx1P13297 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Msx1P13297 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Msx1P13297 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.57■□□□□ 0.4
Msx1P13297 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msx1P13297 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msx1P13297 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msx1P13297 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msx1P13297 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msx1P13297 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msx1P13297 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msx1P13297 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msx1P13297 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Msx1P13297 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.56■□□□□ 0.4
Msx1P13297 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msx1P13297 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Msx1P13297 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msx1P13297 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Msx1P13297 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msx1P13297 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Msx1P13297 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msx1P13297 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msx1P13297 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Msx1P13297 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Msx1P13297 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.55■□□□□ 0.4
Msx1P13297 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Msx1P13297 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Msx1P13297 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.54■□□□□ 0.4
Msx1P13297 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.54■□□□□ 0.4
Msx1P13297 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.54■□□□□ 0.4
Msx1P13297 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Msx1P13297 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Msx1P13297 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms