Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Chmp6P0C0A3 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Gm13146-201ENSMUST00000118508 780 ntBASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chmp6P0C0A3 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Chmp6P0C0A3 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Chmp6P0C0A3 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Chmp6P0C0A3 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Chmp6P0C0A3 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Chmp6P0C0A3 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Chmp6P0C0A3 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Chmp6P0C0A3 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Chmp6P0C0A3 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Chmp6P0C0A3 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.11■□□□□ 0.81
Chmp6P0C0A3 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Chmp6P0C0A3 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Chmp6P0C0A3 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Chmp6P0C0A3 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms