Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
Lmx1bO88609 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC16.82■□□□□ 0.28
Lmx1bO88609 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Lmx1bO88609 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lmx1bO88609 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Lmx1bO88609 Gm5784-201ENSMUST00000179344 2478 ntBASIC16.81■□□□□ 0.28
Lmx1bO88609 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Lmx1bO88609 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Lmx1bO88609 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
Lmx1bO88609 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lmx1bO88609 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lmx1bO88609 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Lmx1bO88609 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lmx1bO88609 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Lmx1bO88609 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC16.8■□□□□ 0.28
Lmx1bO88609 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Lmx1bO88609 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Gm45640-201ENSMUST00000210665 1896 ntBASIC16.8■□□□□ 0.28
Lmx1bO88609 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC16.8■□□□□ 0.28
Lmx1bO88609 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Lmx1bO88609 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Lmx1bO88609 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Lmx1bO88609 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lmx1bO88609 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Lmx1bO88609 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Lmx1bO88609 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lmx1bO88609 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Lmx1bO88609 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC16.79■□□□□ 0.28
Lmx1bO88609 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Lmx1bO88609 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lmx1bO88609 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lmx1bO88609 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Lmx1bO88609 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lmx1bO88609 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lmx1bO88609 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC16.78■□□□□ 0.28
Lmx1bO88609 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.78■□□□□ 0.28
Lmx1bO88609 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC16.78■□□□□ 0.28
Lmx1bO88609 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Lmx1bO88609 Gm37563-201ENSMUST00000192580 1513 ntBASIC16.78■□□□□ 0.28
Lmx1bO88609 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Lmx1bO88609 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lmx1bO88609 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
Lmx1bO88609 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Lmx1bO88609 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC16.77■□□□□ 0.28
Lmx1bO88609 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC16.77■□□□□ 0.28
Lmx1bO88609 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC16.77■□□□□ 0.28
Lmx1bO88609 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC16.77■□□□□ 0.28
Lmx1bO88609 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC16.77■□□□□ 0.28
Lmx1bO88609 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lmx1bO88609 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lmx1bO88609 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Lmx1bO88609 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Lmx1bO88609 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC16.77■□□□□ 0.27
Lmx1bO88609 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lmx1bO88609 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lmx1bO88609 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Lmx1bO88609 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Lmx1bO88609 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.76■□□□□ 0.27
Lmx1bO88609 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lmx1bO88609 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lmx1bO88609 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms