Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Cops4O88544 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC17.16■□□□□ 0.34
Cops4O88544 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Cops4O88544 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cops4O88544 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
Cops4O88544 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.15■□□□□ 0.34
Cops4O88544 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cops4O88544 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Cops4O88544 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Cops4O88544 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cops4O88544 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC17.14■□□□□ 0.33
Cops4O88544 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cops4O88544 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cops4O88544 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cops4O88544 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
Cops4O88544 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cops4O88544 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cops4O88544 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Cops4O88544 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Cops4O88544 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC17.13■□□□□ 0.33
Cops4O88544 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.13■□□□□ 0.33
Cops4O88544 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Cops4O88544 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cops4O88544 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.13■□□□□ 0.33
Cops4O88544 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Cops4O88544 Gm12922-201ENSMUST00000120626 809 ntBASIC17.12■□□□□ 0.33
Cops4O88544 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 Gm43213-201ENSMUST00000151866 1790 ntBASIC17.12■□□□□ 0.33
Cops4O88544 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cops4O88544 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC17.11■□□□□ 0.33
Cops4O88544 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cops4O88544 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.11■□□□□ 0.33
Cops4O88544 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cops4O88544 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.11■□□□□ 0.33
Cops4O88544 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Cops4O88544 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cops4O88544 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.11■□□□□ 0.33
Cops4O88544 Gm9207-201ENSMUST00000198773 1115 ntBASIC17.11■□□□□ 0.33
Cops4O88544 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Cops4O88544 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cops4O88544 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Cops4O88544 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC17.11■□□□□ 0.33
Cops4O88544 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cops4O88544 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.11■□□□□ 0.33
Cops4O88544 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cops4O88544 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms