Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC20.6■□□□□ 0.89
Prom1O54990 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 Gm13158-201ENSMUST00000122007 736 ntBASIC20.6■□□□□ 0.89
Prom1O54990 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.6■□□□□ 0.89
Prom1O54990 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.6■□□□□ 0.89
Prom1O54990 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Prom1O54990 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prom1O54990 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Prom1O54990 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.59■□□□□ 0.89
Prom1O54990 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.59■□□□□ 0.89
Prom1O54990 Gm11927-201ENSMUST00000118472 759 ntBASIC20.59■□□□□ 0.89
Prom1O54990 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Prom1O54990 Gm37055-201ENSMUST00000191866 133 ntBASIC20.59■□□□□ 0.89
Prom1O54990 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Mtag2-201ENSMUST00000058665 714 ntBASIC20.59■□□□□ 0.89
Prom1O54990 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Prom1O54990 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prom1O54990 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prom1O54990 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prom1O54990 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prom1O54990 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prom1O54990 Gm13836-201ENSMUST00000121159 501 ntBASIC20.58■□□□□ 0.89
Prom1O54990 Gm15378-201ENSMUST00000121894 207 ntBASIC20.58■□□□□ 0.89
Prom1O54990 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prom1O54990 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prom1O54990 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Prom1O54990 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prom1O54990 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prom1O54990 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prom1O54990 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prom1O54990 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Prom1O54990 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.57■□□□□ 0.88
Prom1O54990 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prom1O54990 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Prom1O54990 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prom1O54990 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Prom1O54990 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.57■□□□□ 0.88
Prom1O54990 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Prom1O54990 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC20.57■□□□□ 0.88
Prom1O54990 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.57■□□□□ 0.88
Prom1O54990 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prom1O54990 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Prom1O54990 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Prom1O54990 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prom1O54990 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC20.56■□□□□ 0.88
Prom1O54990 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.56■□□□□ 0.88
Prom1O54990 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Prom1O54990 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.56■□□□□ 0.88
Prom1O54990 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Alkbh1-212ENSMUST00000185301 408 ntBASIC20.56■□□□□ 0.88
Prom1O54990 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.56■□□□□ 0.88
Prom1O54990 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Prom1O54990 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.56■□□□□ 0.88
Prom1O54990 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Prom1O54990 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
Prom1O54990 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prom1O54990 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prom1O54990 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prom1O54990 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prom1O54990 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prom1O54990 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Prom1O54990 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
Prom1O54990 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.54■□□□□ 0.88
Prom1O54990 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Prom1O54990 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Prom1O54990 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Prom1O54990 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms