Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sdc4O35988 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.17■□□□□ 0.66
Sdc4O35988 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.17■□□□□ 0.66
Sdc4O35988 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sdc4O35988 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.17■□□□□ 0.66
Sdc4O35988 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Sdc4O35988 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sdc4O35988 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Sdc4O35988 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.16■□□□□ 0.66
Sdc4O35988 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Gm8520-201ENSMUST00000186517 868 ntBASIC19.16■□□□□ 0.66
Sdc4O35988 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.16■□□□□ 0.66
Sdc4O35988 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sdc4O35988 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Sdc4O35988 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Sdc4O35988 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Sdc4O35988 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.15■□□□□ 0.66
Sdc4O35988 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.15■□□□□ 0.66
Sdc4O35988 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sdc4O35988 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sdc4O35988 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Sdc4O35988 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Sdc4O35988 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Sdc4O35988 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Sdc4O35988 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Sdc4O35988 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sdc4O35988 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.14■□□□□ 0.65
Sdc4O35988 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Sdc4O35988 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sdc4O35988 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.14■□□□□ 0.65
Sdc4O35988 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Sdc4O35988 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sdc4O35988 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Sdc4O35988 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sdc4O35988 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sdc4O35988 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.14■□□□□ 0.65
Sdc4O35988 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.14■□□□□ 0.65
Sdc4O35988 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Sdc4O35988 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sdc4O35988 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Sdc4O35988 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Sdc4O35988 Gm37856-201ENSMUST00000191634 999 ntBASIC19.13■□□□□ 0.65
Sdc4O35988 Trmt13-210ENSMUST00000198454 880 ntBASIC19.13■□□□□ 0.65
Sdc4O35988 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sdc4O35988 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sdc4O35988 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
Sdc4O35988 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sdc4O35988 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sdc4O35988 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Sdc4O35988 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Sdc4O35988 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Sdc4O35988 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Sdc4O35988 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.12■□□□□ 0.65
Sdc4O35988 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Sdc4O35988 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sdc4O35988 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Sdc4O35988 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Gm2559-201ENSMUST00000201323 363 ntBASIC19.11■□□□□ 0.65
Sdc4O35988 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Sdc4O35988 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
Sdc4O35988 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sdc4O35988 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.11■□□□□ 0.65
Sdc4O35988 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Sdc4O35988 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Sdc4O35988 Gm22240-201ENSMUST00000175225 82 ntBASIC19.1■□□□□ 0.65
Sdc4O35988 Gm44549-201ENSMUST00000208351 577 ntBASIC19.1■□□□□ 0.65
Sdc4O35988 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Sdc4O35988 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Sdc4O35988 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Sdc4O35988 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms