Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 3110018I06Rik-201ENSMUST00000082269 1005 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Cux1P53564 Akap8-201ENSMUST00000002699 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cux1P53564 Naip1-202ENSMUST00000221727 1968 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cux1P53564 Net1-202ENSMUST00000099946 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cux1P53564 Pkp4-203ENSMUST00000112577 4222 ntTSL 5 BASIC11.79□□□□□ -0.52
Cux1P53564 Adgrl3-209ENSMUST00000119385 4905 ntTSL 5 BASIC11.79□□□□□ -0.52
Cux1P53564 Wdr48-205ENSMUST00000215307 3776 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cux1P53564 Syt2-201ENSMUST00000121990 6879 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cux1P53564 1700007E05Rik-201ENSMUST00000186196 1513 ntBASIC11.79□□□□□ -0.52
Cux1P53564 Gm26720-201ENSMUST00000181260 3538 ntTSL 5 BASIC11.78□□□□□ -0.52
Cux1P53564 Ces3a-202ENSMUST00000093223 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Gm43196-201ENSMUST00000201762 2114 ntBASIC11.78□□□□□ -0.52
Cux1P53564 Gm3139-201ENSMUST00000178330 1446 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Cux1P53564 Gm3183-201ENSMUST00000180076 1446 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Cux1P53564 Krt39-202ENSMUST00000107445 1633 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Cux1P53564 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Pgbd1-205ENSMUST00000151743 2642 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Ctage5-208ENSMUST00000175877 2612 ntTSL 5 BASIC11.78□□□□□ -0.52
Cux1P53564 Hdac9-204ENSMUST00000209750 3204 ntAPPRIS P5 TSL 5 BASIC11.78□□□□□ -0.52
Cux1P53564 Gm15217-201ENSMUST00000111826 733 ntAPPRIS P5 TSL 2 BASIC11.78□□□□□ -0.52
Cux1P53564 Gm14547-201ENSMUST00000138341 371 ntTSL 5 BASIC11.78□□□□□ -0.52
Cux1P53564 Gm26863-201ENSMUST00000181144 624 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Gm34583-203ENSMUST00000202586 454 ntBASIC11.78□□□□□ -0.52
Cux1P53564 Gm2814-201ENSMUST00000207074 1277 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Gm45345-201ENSMUST00000211427 555 ntTSL 2 BASIC11.78□□□□□ -0.52
Cux1P53564 Reg1-201ENSMUST00000079926 769 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Myo1f-201ENSMUST00000087605 3819 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Tm4sf1-202ENSMUST00000171384 2855 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Gm37326-201ENSMUST00000192828 3071 ntBASIC11.78□□□□□ -0.52
Cux1P53564 Gm6284-201ENSMUST00000209609 4287 ntBASIC11.78□□□□□ -0.52
Cux1P53564 Arfgef2-201ENSMUST00000099078 8770 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Cd200r4-201ENSMUST00000114626 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Gm45657-201ENSMUST00000211318 1349 ntBASIC11.78□□□□□ -0.52
Cux1P53564 AC165260.6-202ENSMUST00000224959 1958 ntBASIC11.78□□□□□ -0.52
Cux1P53564 Umps-201ENSMUST00000023510 3484 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Usp50-201ENSMUST00000028842 1361 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Pdgfra-208ENSMUST00000202681 2876 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Cux1P53564 Olfr1199-204ENSMUST00000213138 2657 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Cux1P53564 Gimap4-202ENSMUST00000090070 1804 ntAPPRIS P3 TSL 2 BASIC11.78□□□□□ -0.52
Cux1P53564 Ugt3a2-201ENSMUST00000072403 2329 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cux1P53564 Gm29811-201ENSMUST00000197386 1671 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Cux1P53564 Olfr366-202ENSMUST00000214897 5333 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Cux1P53564 Acox3-210ENSMUST00000202266 3501 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Cux1P53564 Prpf40a-208ENSMUST00000210789 3773 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Cux1P53564 Klhl10-202ENSMUST00000107395 932 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Cux1P53564 Vmn1r-ps123-201ENSMUST00000110449 237 ntBASIC11.77□□□□□ -0.52
Cux1P53564 Gm6743-201ENSMUST00000117345 1066 ntBASIC11.77□□□□□ -0.52
Cux1P53564 Gm15913-201ENSMUST00000118492 331 ntBASIC11.77□□□□□ -0.52
Cux1P53564 H3f3a-ps1-201ENSMUST00000119546 410 ntBASIC11.77□□□□□ -0.52
Cux1P53564 Ighv2-9-1-201ENSMUST00000180013 369 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Cux1P53564 Gm5445-201ENSMUST00000180224 480 ntBASIC11.77□□□□□ -0.52
Cux1P53564 Gm17786-201ENSMUST00000182000 427 ntBASIC11.77□□□□□ -0.52
Cux1P53564 Gm18797-201ENSMUST00000190809 1174 ntBASIC11.77□□□□□ -0.52
Cux1P53564 Gm42963-201ENSMUST00000202943 1217 ntBASIC11.77□□□□□ -0.52
Cux1P53564 AC131660.1-201ENSMUST00000215630 1062 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Cux1P53564 4930584E12Rik-201ENSMUST00000216646 981 ntBASIC11.77□□□□□ -0.52
Cux1P53564 AC161275.1-201ENSMUST00000224668 208 ntBASIC11.77□□□□□ -0.52
Cux1P53564 Olfr384-201ENSMUST00000072993 939 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Cux1P53564 Olfr1427-201ENSMUST00000087825 938 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Cux1P53564 Car1-201ENSMUST00000094365 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cux1P53564 Olfr743-202ENSMUST00000215793 2203 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm29220-201ENSMUST00000185862 1501 ntTSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm28966-201ENSMUST00000188951 1501 ntTSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm38099-201ENSMUST00000193280 3170 ntBASIC11.77□□□□□ -0.53
Cux1P53564 Gm37069-201ENSMUST00000192742 4142 ntBASIC11.77□□□□□ -0.53
Cux1P53564 Ogdhl-203ENSMUST00000228529 3723 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm38288-201ENSMUST00000195330 1320 ntBASIC11.77□□□□□ -0.53
Cux1P53564 Cbll1-202ENSMUST00000085487 1332 ntTSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Hrh1-203ENSMUST00000160780 2782 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Celf1-203ENSMUST00000068747 7614 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Abcc3-206ENSMUST00000178136 5005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Prdm14-201ENSMUST00000047577 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Lin54-202ENSMUST00000123572 4592 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Plcd4-202ENSMUST00000067916 4552 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Btk-202ENSMUST00000113213 2121 ntTSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Creb5-202ENSMUST00000203487 2648 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 D030068K23Rik-204ENSMUST00000212085 1351 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Ern1-201ENSMUST00000001059 6946 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Ikbkap-201ENSMUST00000030140 6160 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Phf21a-207ENSMUST00000111293 3900 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm10556-201ENSMUST00000180904 3906 ntTSL 2 BASIC11.77□□□□□ -0.53
Cux1P53564 Fam107a-201ENSMUST00000036070 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Gm29077-201ENSMUST00000185784 2169 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Gm28469-201ENSMUST00000186374 2166 ntTSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Cacna1c-213ENSMUST00000188078 6519 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm28134-201ENSMUST00000188690 2166 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Cacna1c-217ENSMUST00000188865 6519 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm28696-201ENSMUST00000189187 2169 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Gm28206-201ENSMUST00000190437 2169 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Gm28593-201ENSMUST00000190989 2170 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Gm37075-201ENSMUST00000191888 2166 ntTSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm37574-201ENSMUST00000194264 2166 ntTSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Gm37657-201ENSMUST00000195425 2169 ntTSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Ints4-201ENSMUST00000026126 3240 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Lama3-201ENSMUST00000092070 10548 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Cux1P53564 Rpgrip1-201ENSMUST00000111600 4565 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cux1P53564 Wfdc5-201ENSMUST00000045127 2322 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Hsf2bp-201ENSMUST00000002145 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Cyp17a1-201ENSMUST00000026012 1815 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Kcnma1-224ENSMUST00000224077 3537 ntAPPRIS ALT2 BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 81.6 ms