Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Trim11Q99PQ2 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trim11Q99PQ2 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim11Q99PQ2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Trim11Q99PQ2 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trim11Q99PQ2 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Trim11Q99PQ2 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim11Q99PQ2 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim11Q99PQ2 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim11Q99PQ2 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim11Q99PQ2 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim11Q99PQ2 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.27■■□□□ 1
Trim11Q99PQ2 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim11Q99PQ2 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim11Q99PQ2 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim11Q99PQ2 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim11Q99PQ2 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim11Q99PQ2 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim11Q99PQ2 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim11Q99PQ2 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim11Q99PQ2 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Gm9988-201ENSMUST00000069786 435 ntBASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Trim11Q99PQ2 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
Trim11Q99PQ2 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim11Q99PQ2 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Trim11Q99PQ2 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim11Q99PQ2 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.2■□□□□ 0.98
Trim11Q99PQ2 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim11Q99PQ2 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim11Q99PQ2 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim11Q99PQ2 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms