Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Gm7860-201ENSMUST00000121190 879 ntBASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smarca1Q6PGB8 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Gm13534-201ENSMUST00000121169 513 ntBASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smarca1Q6PGB8 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Smarca1Q6PGB8 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Smarca1Q6PGB8 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Smarca1Q6PGB8 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Smarca1Q6PGB8 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smarca1Q6PGB8 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smarca1Q6PGB8 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Smarca1Q6PGB8 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Smarca1Q6PGB8 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Smarca1Q6PGB8 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smarca1Q6PGB8 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smarca1Q6PGB8 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Gm10602-201ENSMUST00000098239 609 ntBASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.75■□□□□ 0.91
Smarca1Q6PGB8 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smarca1Q6PGB8 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smarca1Q6PGB8 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 AC112142.1-201ENSMUST00000228796 918 ntBASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.72■□□□□ 0.91
Smarca1Q6PGB8 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smarca1Q6PGB8 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.71■□□□□ 0.91
Smarca1Q6PGB8 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.71■□□□□ 0.91
Smarca1Q6PGB8 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.71■□□□□ 0.91
Smarca1Q6PGB8 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Smarca1Q6PGB8 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smarca1Q6PGB8 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smarca1Q6PGB8 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms