Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cln3Q61124 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cln3Q61124 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cln3Q61124 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cln3Q61124 Alkbh1-212ENSMUST00000185301 408 ntBASIC20.6■□□□□ 0.89
Cln3Q61124 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cln3Q61124 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Cln3Q61124 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cln3Q61124 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cln3Q61124 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cln3Q61124 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Cln3Q61124 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.59■□□□□ 0.89
Cln3Q61124 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Cln3Q61124 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cln3Q61124 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.59■□□□□ 0.89
Cln3Q61124 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cln3Q61124 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cln3Q61124 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cln3Q61124 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cln3Q61124 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cln3Q61124 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Cln3Q61124 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cln3Q61124 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cln3Q61124 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cln3Q61124 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cln3Q61124 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cln3Q61124 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Cln3Q61124 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cln3Q61124 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.58■□□□□ 0.88
Cln3Q61124 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cln3Q61124 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Cln3Q61124 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Cln3Q61124 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cln3Q61124 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cln3Q61124 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cln3Q61124 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cln3Q61124 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cln3Q61124 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cln3Q61124 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cln3Q61124 Mtag2-201ENSMUST00000058665 714 ntBASIC20.57■□□□□ 0.88
Cln3Q61124 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cln3Q61124 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cln3Q61124 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cln3Q61124 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cln3Q61124 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cln3Q61124 Flg-201ENSMUST00000050758 1488 ntBASIC20.56■□□□□ 0.88
Cln3Q61124 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Cln3Q61124 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC20.56■□□□□ 0.88
Cln3Q61124 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.56■□□□□ 0.88
Cln3Q61124 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.56■□□□□ 0.88
Cln3Q61124 AC107452.1-201ENSMUST00000227963 481 ntBASIC20.56■□□□□ 0.88
Cln3Q61124 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Cln3Q61124 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cln3Q61124 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Cln3Q61124 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Cln3Q61124 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC20.55■□□□□ 0.88
Cln3Q61124 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cln3Q61124 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cln3Q61124 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cln3Q61124 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Cln3Q61124 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cln3Q61124 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Cln3Q61124 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cln3Q61124 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC20.54■□□□□ 0.88
Cln3Q61124 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.54■□□□□ 0.88
Cln3Q61124 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Cln3Q61124 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Cln3Q61124 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cln3Q61124 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Cln3Q61124 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.53■□□□□ 0.88
Cln3Q61124 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Cln3Q61124 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms