Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC17.77■□□□□ 0.44
Nr1h4Q60641 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nr1h4Q60641 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nr1h4Q60641 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nr1h4Q60641 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
Nr1h4Q60641 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Nr1h4Q60641 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.77■□□□□ 0.43
Nr1h4Q60641 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nr1h4Q60641 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nr1h4Q60641 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.76■□□□□ 0.43
Nr1h4Q60641 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nr1h4Q60641 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Nr1h4Q60641 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Spcs1-204ENSMUST00000226782 949 ntBASIC17.75■□□□□ 0.43
Nr1h4Q60641 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nr1h4Q60641 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.74■□□□□ 0.43
Nr1h4Q60641 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nr1h4Q60641 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.73■□□□□ 0.43
Nr1h4Q60641 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.73■□□□□ 0.43
Nr1h4Q60641 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nr1h4Q60641 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nr1h4Q60641 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nr1h4Q60641 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nr1h4Q60641 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.71■□□□□ 0.43
Nr1h4Q60641 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Nr1h4Q60641 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.42
Nr1h4Q60641 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nr1h4Q60641 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nr1h4Q60641 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms