Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.96■□□□□ 0.79
Upf3bQ3ULL6 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Gm7291-201ENSMUST00000199147 382 ntBASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3bQ3ULL6 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Nespas-201ENSMUST00000143738 1083 ntBASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3bQ3ULL6 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 BC021767-201ENSMUST00000126387 1716 ntBASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3bQ3ULL6 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.92■□□□□ 0.78
Upf3bQ3ULL6 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3bQ3ULL6 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3bQ3ULL6 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms