Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3aQ3ULJ3 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Upf3aQ3ULJ3 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Mir1199-201ENSMUST00000117015 119 ntBASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3aQ3ULJ3 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3aQ3ULJ3 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3aQ3ULJ3 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3aQ3ULJ3 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.68■□□□□ 0.74
Upf3aQ3ULJ3 Gm13836-201ENSMUST00000121159 501 ntBASIC19.68■□□□□ 0.74
Upf3aQ3ULJ3 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Upf3aQ3ULJ3 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3aQ3ULJ3 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Krtap5-1-202ENSMUST00000188274 742 ntBASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Gm29994-201ENSMUST00000195495 1193 ntBASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC19.66■□□□□ 0.74
Upf3aQ3ULJ3 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Gm11927-201ENSMUST00000118472 759 ntBASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Flg-201ENSMUST00000050758 1488 ntBASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3aQ3ULJ3 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC19.64■□□□□ 0.74
Upf3aQ3ULJ3 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Upf3aQ3ULJ3 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3aQ3ULJ3 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms