Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
Limch1Q3UH68 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC21.95■■□□□ 1.1
Limch1Q3UH68 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Limch1Q3UH68 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.94■■□□□ 1.1
Limch1Q3UH68 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.94■■□□□ 1.1
Limch1Q3UH68 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limch1Q3UH68 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Limch1Q3UH68 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limch1Q3UH68 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limch1Q3UH68 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Limch1Q3UH68 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limch1Q3UH68 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limch1Q3UH68 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Limch1Q3UH68 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
Limch1Q3UH68 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Limch1Q3UH68 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Limch1Q3UH68 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Limch1Q3UH68 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
Limch1Q3UH68 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Limch1Q3UH68 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Limch1Q3UH68 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.91■■□□□ 1.1
Limch1Q3UH68 Gm7514-201ENSMUST00000209475 934 ntBASIC21.91■■□□□ 1.1
Limch1Q3UH68 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 Ap3s1-204ENSMUST00000225520 957 ntBASIC21.91■■□□□ 1.1
Limch1Q3UH68 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Limch1Q3UH68 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Limch1Q3UH68 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Limch1Q3UH68 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Gm38342-201ENSMUST00000195710 2980 ntBASIC21.9■■□□□ 1.1
Limch1Q3UH68 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Limch1Q3UH68 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Limch1Q3UH68 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Limch1Q3UH68 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC21.9■■□□□ 1.1
Limch1Q3UH68 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Limch1Q3UH68 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Limch1Q3UH68 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Limch1Q3UH68 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Limch1Q3UH68 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Limch1Q3UH68 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Limch1Q3UH68 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Limch1Q3UH68 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Limch1Q3UH68 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Limch1Q3UH68 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Limch1Q3UH68 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Limch1Q3UH68 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Limch1Q3UH68 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Limch1Q3UH68 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC21.88■■□□□ 1.09
Limch1Q3UH68 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.88■■□□□ 1.09
Limch1Q3UH68 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.88■■□□□ 1.09
Limch1Q3UH68 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.88■■□□□ 1.09
Limch1Q3UH68 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Limch1Q3UH68 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Limch1Q3UH68 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms