Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Lig3P97386 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig3P97386 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.25■□□□□ 0.83
Lig3P97386 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lig3P97386 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Lig3P97386 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lig3P97386 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lig3P97386 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.24■□□□□ 0.83
Lig3P97386 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lig3P97386 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Lig3P97386 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Lig3P97386 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lig3P97386 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Lig3P97386 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lig3P97386 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.23■□□□□ 0.83
Lig3P97386 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.23■□□□□ 0.83
Lig3P97386 Mir6236-201ENSMUST00000184437 123 ntBASIC20.23■□□□□ 0.83
Lig3P97386 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lig3P97386 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lig3P97386 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lig3P97386 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.23■□□□□ 0.83
Lig3P97386 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lig3P97386 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lig3P97386 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Lig3P97386 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lig3P97386 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.22■□□□□ 0.83
Lig3P97386 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lig3P97386 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.22■□□□□ 0.83
Lig3P97386 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
Lig3P97386 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.21■□□□□ 0.83
Lig3P97386 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lig3P97386 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Lig3P97386 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.21■□□□□ 0.83
Lig3P97386 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.21■□□□□ 0.83
Lig3P97386 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.21■□□□□ 0.83
Lig3P97386 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
Lig3P97386 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Lig3P97386 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lig3P97386 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lig3P97386 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lig3P97386 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lig3P97386 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Lig3P97386 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lig3P97386 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.2■□□□□ 0.82
Lig3P97386 Gm37856-201ENSMUST00000191634 999 ntBASIC20.2■□□□□ 0.82
Lig3P97386 Gm6365-201ENSMUST00000054711 744 ntBASIC20.2■□□□□ 0.82
Lig3P97386 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lig3P97386 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Lig3P97386 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lig3P97386 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Lig3P97386 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lig3P97386 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lig3P97386 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Lig3P97386 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.19■□□□□ 0.82
Lig3P97386 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Lig3P97386 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Lig3P97386 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lig3P97386 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lig3P97386 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lig3P97386 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lig3P97386 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lig3P97386 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.19■□□□□ 0.82
Lig3P97386 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lig3P97386 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Lig3P97386 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Lig3P97386 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Lig3P97386 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
Lig3P97386 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.18■□□□□ 0.82
Lig3P97386 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.18■□□□□ 0.82
Lig3P97386 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.18■□□□□ 0.82
Lig3P97386 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.18■□□□□ 0.82
Lig3P97386 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Lig3P97386 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Lig3P97386 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Lig3P97386 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lig3P97386 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lig3P97386 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.17■□□□□ 0.82
Lig3P97386 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Lig3P97386 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.17■□□□□ 0.82
Lig3P97386 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.17■□□□□ 0.82
Lig3P97386 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Lig3P97386 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lig3P97386 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lig3P97386 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lig3P97386 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
Lig3P97386 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.16■□□□□ 0.82
Lig3P97386 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms