Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx3P70354 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx3P70354 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
Msx3P70354 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.22■□□□□ 0.67
Msx3P70354 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx3P70354 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.22■□□□□ 0.67
Msx3P70354 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx3P70354 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.22■□□□□ 0.67
Msx3P70354 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Msx3P70354 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx3P70354 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx3P70354 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx3P70354 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx3P70354 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.21■□□□□ 0.67
Msx3P70354 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Msx3P70354 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Msx3P70354 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msx3P70354 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Msx3P70354 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx3P70354 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx3P70354 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msx3P70354 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msx3P70354 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Msx3P70354 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx3P70354 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Msx3P70354 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msx3P70354 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.2■□□□□ 0.66
Msx3P70354 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.2■□□□□ 0.66
Msx3P70354 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.2■□□□□ 0.66
Msx3P70354 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx3P70354 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx3P70354 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msx3P70354 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx3P70354 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.19■□□□□ 0.66
Msx3P70354 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.19■□□□□ 0.66
Msx3P70354 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Msx3P70354 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx3P70354 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.19■□□□□ 0.66
Msx3P70354 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msx3P70354 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msx3P70354 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msx3P70354 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.18■□□□□ 0.66
Msx3P70354 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msx3P70354 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Msx3P70354 Gm9988-201ENSMUST00000069786 435 ntBASIC19.18■□□□□ 0.66
Msx3P70354 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msx3P70354 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msx3P70354 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msx3P70354 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Gm13146-201ENSMUST00000118508 780 ntBASIC19.17■□□□□ 0.66
Msx3P70354 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.17■□□□□ 0.66
Msx3P70354 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.17■□□□□ 0.66
Msx3P70354 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Msx3P70354 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.17■□□□□ 0.66
Msx3P70354 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx3P70354 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Msx3P70354 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Msx3P70354 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msx3P70354 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Msx3P70354 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msx3P70354 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Msx3P70354 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.16■□□□□ 0.66
Msx3P70354 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msx3P70354 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msx3P70354 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC19.16■□□□□ 0.66
Msx3P70354 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Msx3P70354 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Msx3P70354 Reep4-203ENSMUST00000226563 1444 ntBASIC19.16■□□□□ 0.66
Msx3P70354 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.15■□□□□ 0.66
Msx3P70354 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx3P70354 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx3P70354 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx3P70354 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx3P70354 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Msx3P70354 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Msx3P70354 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx3P70354 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx3P70354 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Msx3P70354 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx3P70354 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms