Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Msh3P13705 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.65■□□□□ 0.9
Msh3P13705 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.65■□□□□ 0.9
Msh3P13705 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Msh3P13705 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.65■□□□□ 0.9
Msh3P13705 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Msh3P13705 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Msh3P13705 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Msh3P13705 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Msh3P13705 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Msh3P13705 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Msh3P13705 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Msh3P13705 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.64■□□□□ 0.89
Msh3P13705 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.64■□□□□ 0.89
Msh3P13705 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.63■□□□□ 0.89
Msh3P13705 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 AV356131-201ENSMUST00000206201 750 ntBASIC20.63■□□□□ 0.89
Msh3P13705 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Msh3P13705 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Msh3P13705 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msh3P13705 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msh3P13705 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msh3P13705 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Msh3P13705 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msh3P13705 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.62■□□□□ 0.89
Msh3P13705 Gm26571-201ENSMUST00000181399 666 ntBASIC20.62■□□□□ 0.89
Msh3P13705 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msh3P13705 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Msh3P13705 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Msh3P13705 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Msh3P13705 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Msh3P13705 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Msh3P13705 Gm8495-201ENSMUST00000188740 694 ntBASIC20.61■□□□□ 0.89
Msh3P13705 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Msh3P13705 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.61■□□□□ 0.89
Msh3P13705 Gm18671-201ENSMUST00000214826 683 ntBASIC20.61■□□□□ 0.89
Msh3P13705 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.61■□□□□ 0.89
Msh3P13705 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Msh3P13705 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Msh3P13705 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
Msh3P13705 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Msh3P13705 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Msh3P13705 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Msh3P13705 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.6■□□□□ 0.89
Msh3P13705 Gm6420-201ENSMUST00000193885 723 ntBASIC20.6■□□□□ 0.89
Msh3P13705 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Msh3P13705 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Msh3P13705 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Msh3P13705 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Msh3P13705 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Msh3P13705 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.6■□□□□ 0.89
Msh3P13705 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Msh3P13705 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Msh3P13705 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Msh3P13705 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Msh3P13705 Gm7514-201ENSMUST00000209475 934 ntBASIC20.59■□□□□ 0.89
Msh3P13705 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Msh3P13705 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Msh3P13705 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Msh3P13705 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Msh3P13705 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Msh3P13705 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh3P13705 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh3P13705 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.58■□□□□ 0.89
Msh3P13705 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh3P13705 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh3P13705 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Msh3P13705 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.58■□□□□ 0.88
Msh3P13705 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Msh3P13705 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Msh3P13705 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh3P13705 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Msh3P13705 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.57■□□□□ 0.88
Msh3P13705 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh3P13705 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh3P13705 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
Msh3P13705 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh3P13705 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh3P13705 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh3P13705 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh3P13705 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Msh3P13705 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Msh3P13705 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Msh3P13705 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Msh3P13705 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh3P13705 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh3P13705 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
Msh3P13705 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Msh3P13705 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Msh3P13705 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Msh3P13705 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Msh3P13705 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh3P13705 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms