Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
Col1a1P11087 Gm6277-202ENSMUST00000224036 2779 ntBASIC22.05■■□□□ 1.12
Col1a1P11087 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC22.04■■□□□ 1.12
Col1a1P11087 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Col1a1P11087 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.04■■□□□ 1.12
Col1a1P11087 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Col1a1P11087 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Col1a1P11087 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Col1a1P11087 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Col1a1P11087 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Col1a1P11087 Arhgef4-208ENSMUST00000211073 171 ntBASIC22.03■■□□□ 1.12
Col1a1P11087 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
Col1a1P11087 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC22.03■■□□□ 1.12
Col1a1P11087 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC22.03■■□□□ 1.12
Col1a1P11087 Gm16042-201ENSMUST00000204813 1247 ntBASIC22.03■■□□□ 1.12
Col1a1P11087 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Col1a1P11087 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC22.02■■□□□ 1.12
Col1a1P11087 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Col1a1P11087 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Col1a1P11087 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
Col1a1P11087 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Col1a1P11087 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Col1a1P11087 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
Col1a1P11087 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Col1a1P11087 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Col1a1P11087 Gm30025-201ENSMUST00000218555 728 ntBASIC22.02■■□□□ 1.12
Col1a1P11087 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Col1a1P11087 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Col1a1P11087 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC22.01■■□□□ 1.11
Col1a1P11087 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Col1a1P11087 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
Col1a1P11087 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Col1a1P11087 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Col1a1P11087 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Col1a1P11087 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC22■■□□□ 1.11
Col1a1P11087 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22■■□□□ 1.11
Col1a1P11087 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Col1a1P11087 Zfp783-201ENSMUST00000095946 670 ntBASIC22■■□□□ 1.11
Col1a1P11087 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Col1a1P11087 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC22■■□□□ 1.11
Col1a1P11087 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Col1a1P11087 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Col1a1P11087 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Col1a1P11087 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC21.99■■□□□ 1.11
Col1a1P11087 Gm10138-203ENSMUST00000206952 366 ntBASIC21.99■■□□□ 1.11
Col1a1P11087 Odf3b-204ENSMUST00000227834 930 ntBASIC21.99■■□□□ 1.11
Col1a1P11087 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Col1a1P11087 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Col1a1P11087 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.99■■□□□ 1.11
Col1a1P11087 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Col1a1P11087 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Col1a1P11087 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Col1a1P11087 Gm43183-201ENSMUST00000200632 547 ntBASIC21.98■■□□□ 1.11
Col1a1P11087 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Col1a1P11087 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Col1a1P11087 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Col1a1P11087 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.97■■□□□ 1.11
Col1a1P11087 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col1a1P11087 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC21.97■■□□□ 1.11
Col1a1P11087 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC21.97■■□□□ 1.11
Col1a1P11087 Gm18025-201ENSMUST00000221733 862 ntBASIC21.97■■□□□ 1.11
Col1a1P11087 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC21.97■■□□□ 1.11
Col1a1P11087 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col1a1P11087 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Col1a1P11087 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col1a1P11087 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col1a1P11087 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
Col1a1P11087 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Col1a1P11087 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC21.96■■□□□ 1.11
Col1a1P11087 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col1a1P11087 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col1a1P11087 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col1a1P11087 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC21.96■■□□□ 1.11
Col1a1P11087 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Col1a1P11087 Gm13559-201ENSMUST00000120476 863 ntBASIC21.96■■□□□ 1.11
Col1a1P11087 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC21.96■■□□□ 1.11
Col1a1P11087 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Col1a1P11087 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col1a1P11087 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col1a1P11087 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col1a1P11087 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Col1a1P11087 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col1a1P11087 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col1a1P11087 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms