Protein–RNA interactions for Protein: O35600

Abca4, Retinal-specific ATP-binding cassette transporter, mousemouse

Predictions only

Length 2,310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca4O35600 Gm22697-201ENSMUST00000175194 63 ntBASIC17.66■□□□□ 0.42
Abca4O35600 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.66■□□□□ 0.42
Abca4O35600 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Abca4O35600 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Abca4O35600 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
Abca4O35600 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Abca4O35600 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.65■□□□□ 0.42
Abca4O35600 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Abca4O35600 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Abca4O35600 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Abca4O35600 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.65■□□□□ 0.42
Abca4O35600 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC17.64■□□□□ 0.41
Abca4O35600 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Abca4O35600 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.64■□□□□ 0.41
Abca4O35600 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Gm37292-201ENSMUST00000192062 758 ntBASIC17.64■□□□□ 0.41
Abca4O35600 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.64■□□□□ 0.41
Abca4O35600 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Abca4O35600 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Abca4O35600 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Abca4O35600 Gm37935-201ENSMUST00000192012 982 ntBASIC17.63■□□□□ 0.41
Abca4O35600 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Abca4O35600 Gm15375-201ENSMUST00000119510 849 ntBASIC17.63■□□□□ 0.41
Abca4O35600 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC17.63■□□□□ 0.41
Abca4O35600 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC17.63■□□□□ 0.41
Abca4O35600 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Abca4O35600 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Abca4O35600 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
Abca4O35600 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Abca4O35600 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.62■□□□□ 0.41
Abca4O35600 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Abca4O35600 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Abca4O35600 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Abca4O35600 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.61■□□□□ 0.41
Abca4O35600 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Abca4O35600 Gm27525-201ENSMUST00000184465 107 ntBASIC17.6■□□□□ 0.41
Abca4O35600 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Abca4O35600 Gm18115-201ENSMUST00000221209 621 ntBASIC17.6■□□□□ 0.41
Abca4O35600 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.6■□□□□ 0.41
Abca4O35600 Gm37415-201ENSMUST00000192265 2054 ntBASIC17.6■□□□□ 0.41
Abca4O35600 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Abca4O35600 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Abca4O35600 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Abca4O35600 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC17.6■□□□□ 0.41
Abca4O35600 Gm9013-201ENSMUST00000132939 882 ntBASIC17.6■□□□□ 0.41
Abca4O35600 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Abca4O35600 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.6■□□□□ 0.41
Abca4O35600 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Abca4O35600 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Abca4O35600 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Abca4O35600 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Abca4O35600 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Abca4O35600 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Abca4O35600 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.59■□□□□ 0.41
Abca4O35600 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Abca4O35600 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Abca4O35600 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
Abca4O35600 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Abca4O35600 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Abca4O35600 Zfp783-201ENSMUST00000095946 670 ntBASIC17.59■□□□□ 0.41
Abca4O35600 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Abca4O35600 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Abca4O35600 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Abca4O35600 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Abca4O35600 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Abca4O35600 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.58■□□□□ 0.41
Abca4O35600 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
Abca4O35600 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC17.58■□□□□ 0.41
Abca4O35600 Gm2274-201ENSMUST00000184539 609 ntBASIC17.58■□□□□ 0.41
Abca4O35600 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Abca4O35600 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Abca4O35600 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms