Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cx3cl1O35188 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Cx3cl1O35188 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cx3cl1O35188 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cx3cl1O35188 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.47■□□□□ 0.39
Cx3cl1O35188 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC17.47■□□□□ 0.39
Cx3cl1O35188 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cx3cl1O35188 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.46■□□□□ 0.39
Cx3cl1O35188 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.46■□□□□ 0.39
Cx3cl1O35188 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Cx3cl1O35188 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.45■□□□□ 0.38
Cx3cl1O35188 Nespas-201ENSMUST00000143738 1083 ntBASIC17.45■□□□□ 0.38
Cx3cl1O35188 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Cx3cl1O35188 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cx3cl1O35188 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.45■□□□□ 0.38
Cx3cl1O35188 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.44■□□□□ 0.38
Cx3cl1O35188 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cx3cl1O35188 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
Cx3cl1O35188 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Cx3cl1O35188 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Cx3cl1O35188 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cx3cl1O35188 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cx3cl1O35188 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cx3cl1O35188 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Cx3cl1O35188 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms