Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Il9r-205ENSMUST00000145401 4482 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Slc6a3-201ENSMUST00000022100 3456 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 3632451O06Rik-202ENSMUST00000118129 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Bicc1-202ENSMUST00000131445 3005 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Fbln5-201ENSMUST00000021603 5829 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Gm4884-201ENSMUST00000164422 2852 ntAPPRIS P1 TSL 2 BASIC9.25□□□□□ -0.93
Col1a1P11087 Wdpcp-201ENSMUST00000020568 2792 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Bmpr1b-201ENSMUST00000029948 5349 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Klhl41-201ENSMUST00000100050 2529 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 P2ry14-206ENSMUST00000197841 2476 ntTSL 5 BASIC9.25□□□□□ -0.93
Col1a1P11087 Gigyf2-217ENSMUST00000174501 3876 ntAPPRIS P3 TSL 5 BASIC9.25□□□□□ -0.93
Col1a1P11087 Ift122-202ENSMUST00000112923 3765 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
Col1a1P11087 D7Bwg0826e-201ENSMUST00000208484 3795 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 C5ar2-202ENSMUST00000171425 3381 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Pcyt1a-201ENSMUST00000079791 4789 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Ccdc71-202ENSMUST00000193170 3044 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Rhox3c-201ENSMUST00000115188 1053 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
Col1a1P11087 Gm15739-201ENSMUST00000118049 872 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Gm11810-201ENSMUST00000118311 333 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Gm14531-201ENSMUST00000120845 285 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Gm12720-201ENSMUST00000123834 472 ntTSL 2 BASIC9.25□□□□□ -0.93
Col1a1P11087 Gm13663-202ENSMUST00000145563 643 ntTSL 5 BASIC9.25□□□□□ -0.93
Col1a1P11087 Ube2v1-207ENSMUST00000151365 924 ntTSL 2 BASIC9.25□□□□□ -0.93
Col1a1P11087 Gm25164-201ENSMUST00000158908 116 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Olfr270-202ENSMUST00000172257 939 ntAPPRIS P2 BASIC9.25□□□□□ -0.93
Col1a1P11087 Gm25692-201ENSMUST00000175444 125 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Mir8094-201ENSMUST00000183361 117 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Gm28580-201ENSMUST00000186767 88 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Gm29383-201ENSMUST00000188284 480 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Gm31831-201ENSMUST00000196240 684 ntTSL 3 BASIC9.25□□□□□ -0.93
Col1a1P11087 Gm31013-201ENSMUST00000213576 715 ntTSL 3 BASIC9.25□□□□□ -0.93
Col1a1P11087 AC134414.1-201ENSMUST00000228499 1221 ntBASIC9.25□□□□□ -0.93
Col1a1P11087 Rhox3h-201ENSMUST00000096457 1053 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
Col1a1P11087 L3mbtl2-201ENSMUST00000023029 3487 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Ece2-208ENSMUST00000120394 3432 ntAPPRIS P4 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Ncam1-202ENSMUST00000166811 3088 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Plag1-201ENSMUST00000003369 4774 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Tmem100-201ENSMUST00000092788 1767 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Col1a1P11087 Asb17-201ENSMUST00000044089 2553 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Slc2a9-210ENSMUST00000155634 3164 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
Col1a1P11087 4921517D22Rik-201ENSMUST00000061597 3149 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Gm37618-201ENSMUST00000192891 3075 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 Sh3bgrl2-201ENSMUST00000113215 4565 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 E430024I08Rik-202ENSMUST00000220632 1513 ntTSL 5 BASIC9.24□□□□□ -0.93
Col1a1P11087 Stk38l-202ENSMUST00000111644 2274 ntTSL 5 BASIC9.24□□□□□ -0.93
Col1a1P11087 Rps20-203ENSMUST00000138502 3706 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Gm37978-201ENSMUST00000194736 2915 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 Ctbp2-214ENSMUST00000169570 3604 ntTSL 5 BASIC9.24□□□□□ -0.93
Col1a1P11087 Psmd10-201ENSMUST00000033805 1430 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Smchd1-201ENSMUST00000127430 7052 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
Col1a1P11087 Epb42-202ENSMUST00000102490 4115 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Gm43775-201ENSMUST00000201019 3395 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 Crb1-201ENSMUST00000059825 5901 ntAPPRIS P2 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Platr30-202ENSMUST00000199348 1934 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Iglv1-201ENSMUST00000103746 391 ntAPPRIS P1 BASIC9.24□□□□□ -0.93
Col1a1P11087 Vmn1r-ps123-201ENSMUST00000110449 237 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 Gm15293-201ENSMUST00000110754 418 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
Col1a1P11087 Gm8089-201ENSMUST00000122463 968 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 A330102I10Rik-201ENSMUST00000130109 501 ntTSL 2 BASIC9.24□□□□□ -0.93
Col1a1P11087 Gm15133-201ENSMUST00000139019 843 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Il1rn-205ENSMUST00000142093 321 ntTSL 3 BASIC9.24□□□□□ -0.93
Col1a1P11087 Cd180-202ENSMUST00000167144 430 ntTSL 2 BASIC9.24□□□□□ -0.93
Col1a1P11087 2010103J01Rik-201ENSMUST00000192375 388 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Gm37225-201ENSMUST00000193423 325 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 4933403L11Rik-201ENSMUST00000193857 1121 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 Gm45725-201ENSMUST00000212962 337 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 AC122360.1-201ENSMUST00000217737 624 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 CT009711.2-202ENSMUST00000224538 973 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 CT009527.2-201ENSMUST00000225386 606 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 Rfwd3-201ENSMUST00000038739 4443 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Cul2-201ENSMUST00000025073 3727 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Trpa1-201ENSMUST00000041447 4263 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Tcf23-201ENSMUST00000006818 4116 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 D7Ertd443e-201ENSMUST00000094002 2908 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
Col1a1P11087 Slc39a9-201ENSMUST00000085245 5201 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Gm37995-201ENSMUST00000194958 1714 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 Cuzd1-201ENSMUST00000046611 2256 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Zfyve26-201ENSMUST00000021547 9391 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Tma16-201ENSMUST00000026681 4328 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Mkl1-201ENSMUST00000109579 4154 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Patj-206ENSMUST00000107033 3624 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 Gm12258-201ENSMUST00000093768 2524 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 CT009711.1-201ENSMUST00000223992 3040 ntBASIC9.24□□□□□ -0.93
Col1a1P11087 Hsf3-201ENSMUST00000059003 1479 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Col1a1P11087 4930470B04Rik-201ENSMUST00000192005 1926 ntBASIC9.23□□□□□ -0.93
Col1a1P11087 Olfr522-201ENSMUST00000050585 4766 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
Col1a1P11087 Usp3-202ENSMUST00000098613 2797 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Col1a1P11087 Rgs9-203ENSMUST00000106704 3464 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Col1a1P11087 4930453H23Rik-201ENSMUST00000125569 1719 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Col1a1P11087 Defa-ps7-201ENSMUST00000117139 168 ntBASIC9.23□□□□□ -0.93
Col1a1P11087 Gm13414-201ENSMUST00000117516 727 ntBASIC9.23□□□□□ -0.93
Col1a1P11087 1700011I03Rik-204ENSMUST00000135806 831 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Col1a1P11087 E130111B04Rik-201ENSMUST00000156781 450 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Col1a1P11087 Gm15013-202ENSMUST00000183728 801 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
Col1a1P11087 Gm29129-201ENSMUST00000191121 659 ntTSL 3 BASIC9.23□□□□□ -0.93
Col1a1P11087 Ccl7-201ENSMUST00000021011 801 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Col1a1P11087 Gm45345-201ENSMUST00000211427 555 ntTSL 2 BASIC9.23□□□□□ -0.93
Col1a1P11087 AC125087.1-201ENSMUST00000227552 514 ntBASIC9.23□□□□□ -0.93
Col1a1P11087 1700011I03Rik-201ENSMUST00000079738 1013 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
Col1a1P11087 Nrxn3-201ENSMUST00000057634 4634 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 113 ms