Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Antxrl-201ENSMUST00000058725 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Ifih1-201ENSMUST00000028259 5470 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Gcnt2-201ENSMUST00000067778 4038 ntAPPRIS P5 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Ttll1-203ENSMUST00000109480 1876 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cux1P53564 Crtam-201ENSMUST00000034519 1876 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Cux1P53564 Vmn1r176-202ENSMUST00000226319 2930 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Cux1P53564 Rpgr-203ENSMUST00000073392 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Gm17057-201ENSMUST00000169887 591 ntTSL 3 BASIC12.16□□□□□ -0.46
Cux1P53564 Gm26662-201ENSMUST00000181129 548 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 1700054A03Rik-201ENSMUST00000187368 780 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Gm37425-201ENSMUST00000193184 432 ntTSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 Gm43243-201ENSMUST00000199964 278 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Gm42897-201ENSMUST00000201486 2112 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Gm35520-201ENSMUST00000209235 784 ntTSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 4933413J09Rik-201ENSMUST00000022427 899 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 AC154640.3-201ENSMUST00000227492 846 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Rbm25-201ENSMUST00000048155 4226 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 Spp1-201ENSMUST00000031243 1410 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Clasp1-208ENSMUST00000187713 5367 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Gm42595-201ENSMUST00000196771 1607 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Meiob-201ENSMUST00000024972 1703 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 Chd1-201ENSMUST00000024620 3196 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Gm44802-201ENSMUST00000208026 1916 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Dennd6a-205ENSMUST00000224378 2424 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Bcas1-203ENSMUST00000109152 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Cdh8-207ENSMUST00000155527 3159 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Ccnd2-201ENSMUST00000000188 6330 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Homer1-209ENSMUST00000109496 772 ntTSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 Gm5135-201ENSMUST00000121100 573 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Gm12414-201ENSMUST00000150794 494 ntTSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 1700034P13Rik-204ENSMUST00000189431 555 ntTSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 4933403L11Rik-201ENSMUST00000193857 1121 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Gm3428-204ENSMUST00000214488 1020 ntTSL 5 BASIC12.16□□□□□ -0.46
Cux1P53564 AC106830.2-201ENSMUST00000226624 943 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Mapk9-202ENSMUST00000043321 1297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Ubl7-209ENSMUST00000216925 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 B230364G03Rik-201ENSMUST00000181479 1374 ntTSL 2 BASIC12.16□□□□□ -0.46
Cux1P53564 Awat1-201ENSMUST00000096361 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Timeless-205ENSMUST00000105244 4341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cux1P53564 Gm42597-201ENSMUST00000196663 1544 ntBASIC12.16□□□□□ -0.46
Cux1P53564 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cux1P53564 Olfr1532-ps1-203ENSMUST00000215949 2439 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Cux1P53564 Gm37245-201ENSMUST00000195137 2713 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Gm37410-201ENSMUST00000193623 3039 ntBASIC12.15□□□□□ -0.46
Cux1P53564 Kpna6-202ENSMUST00000102590 5710 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Tktl2-202ENSMUST00000183187 5485 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Phactr1-205ENSMUST00000128646 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Grin2a-201ENSMUST00000032331 4395 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Ccdc116-201ENSMUST00000023452 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Cass4-202ENSMUST00000103073 3600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Cops2-203ENSMUST00000110463 3392 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Gm9776-201ENSMUST00000059598 2980 ntBASIC12.15□□□□□ -0.46
Cux1P53564 Gm42907-201ENSMUST00000199793 2148 ntBASIC12.15□□□□□ -0.46
Cux1P53564 Tex21-201ENSMUST00000021453 2137 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Gm21560-201ENSMUST00000168480 2066 ntAPPRIS P5 TSL 5 BASIC12.15□□□□□ -0.46
Cux1P53564 Adad1-201ENSMUST00000029274 1838 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cux1P53564 Unc79-202ENSMUST00000101099 8874 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Gpr22-203ENSMUST00000176710 1772 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Cux1P53564 Pole2-202ENSMUST00000221411 1641 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 C130083A15Rik-201ENSMUST00000205707 1460 ntBASIC12.15□□□□□ -0.46
Cux1P53564 1700031F05Rik-201ENSMUST00000048061 1361 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Gm29500-201ENSMUST00000185992 1344 ntTSL 5 BASIC12.15□□□□□ -0.46
Cux1P53564 Gm25180-201ENSMUST00000157746 115 ntBASIC12.15□□□□□ -0.46
Cux1P53564 Gm18501-201ENSMUST00000185363 664 ntBASIC12.15□□□□□ -0.46
Cux1P53564 Gm28980-201ENSMUST00000187877 219 ntBASIC12.15□□□□□ -0.46
Cux1P53564 4930580E04Rik-201ENSMUST00000197377 690 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Gm2505-201ENSMUST00000200413 825 ntBASIC12.15□□□□□ -0.46
Cux1P53564 Gm21048-201ENSMUST00000202470 1166 ntBASIC12.15□□□□□ -0.46
Cux1P53564 Gm43950-201ENSMUST00000204767 996 ntTSL 3 BASIC12.15□□□□□ -0.46
Cux1P53564 Oaz3-207ENSMUST00000204913 689 ntTSL 5 BASIC12.15□□□□□ -0.46
Cux1P53564 Gm45864-201ENSMUST00000211965 1019 ntTSL 2 BASIC12.15□□□□□ -0.46
Cux1P53564 AC122539.1-201ENSMUST00000219925 329 ntBASIC12.15□□□□□ -0.46
Cux1P53564 Sez6l2-202ENSMUST00000106333 3595 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Zbtb21-202ENSMUST00000063605 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Gm16316-201ENSMUST00000154065 3393 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Tagap-201ENSMUST00000036370 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cux1P53564 Rimbp2-207ENSMUST00000200470 4083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Cux1P53564 Prepl-201ENSMUST00000072406 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 Mthfsd-201ENSMUST00000047282 8312 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 Trpa1-201ENSMUST00000041447 4263 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 Gm44090-201ENSMUST00000204669 1834 ntBASIC12.14□□□□□ -0.47
Cux1P53564 Ralgps1-201ENSMUST00000042615 6029 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 L3mbtl2-201ENSMUST00000023029 3487 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 4930512H18Rik-201ENSMUST00000133752 1493 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 Gpr87-203ENSMUST00000200095 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 Anks1b-201ENSMUST00000099364 1383 ntTSL 5 BASIC12.14□□□□□ -0.47
Cux1P53564 Gm25276-201ENSMUST00000104300 124 ntBASIC12.14□□□□□ -0.47
Cux1P53564 Gm24893-201ENSMUST00000122745 369 ntBASIC12.14□□□□□ -0.47
Cux1P53564 Gm15133-201ENSMUST00000139019 843 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 C230035I16Rik-201ENSMUST00000141543 623 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 Gm16297-201ENSMUST00000161466 459 ntBASIC12.14□□□□□ -0.47
Cux1P53564 Gm28512-201ENSMUST00000187415 762 ntTSL 3 BASIC12.14□□□□□ -0.47
Cux1P53564 Gm36961-201ENSMUST00000191980 132 ntBASIC12.14□□□□□ -0.47
Cux1P53564 Gm5103-201ENSMUST00000192081 1086 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 Speer9-ps1-201ENSMUST00000203447 775 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cux1P53564 Gm44196-202ENSMUST00000204186 812 ntTSL 3 BASIC12.14□□□□□ -0.47
Cux1P53564 Gm45725-201ENSMUST00000212962 337 ntBASIC12.14□□□□□ -0.47
Cux1P53564 Gm5654-201ENSMUST00000217787 475 ntBASIC12.14□□□□□ -0.47
Cux1P53564 AC125087.1-201ENSMUST00000227552 514 ntBASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 97.1 ms