Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm9604-201ENSMUST00000211175 433 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 4930401C15Rik-201ENSMUST00000218300 865 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Gm18972-201ENSMUST00000218873 630 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 Gm7712-201ENSMUST00000222214 337 ntTSL 5 BASIC9.34□□□□□ -0.91
Col1a1P11087 Glycam1-204ENSMUST00000228895 641 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 Npvf-201ENSMUST00000031853 812 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Ino80c-201ENSMUST00000055012 909 ntTSL 5 BASIC9.34□□□□□ -0.91
Col1a1P11087 Olfr1364-201ENSMUST00000057453 945 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
Col1a1P11087 Gpkow-201ENSMUST00000049896 3579 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Nol4-202ENSMUST00000081423 3309 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Itgb2l-202ENSMUST00000113773 2806 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Olfr923-203ENSMUST00000213619 2846 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Col1a1P11087 Il1rap-201ENSMUST00000023156 4520 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Vmn2r45-201ENSMUST00000164845 3619 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Col1a1P11087 4930448K20Rik-202ENSMUST00000182072 1433 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 Cpne4-203ENSMUST00000098443 1421 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Gm37949-201ENSMUST00000192808 2091 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 Pde6a-201ENSMUST00000025468 4421 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Harbi1-205ENSMUST00000142692 3686 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Gprc5c-202ENSMUST00000053361 3667 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Atxn7l1-210ENSMUST00000144586 3042 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Ubap2l-208ENSMUST00000196843 3975 ntTSL 5 BASIC9.34□□□□□ -0.91
Col1a1P11087 Kif18b-201ENSMUST00000021311 3326 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Gja10-202ENSMUST00000219644 1857 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Col1a1P11087 Nasp-203ENSMUST00000081182 1461 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 1810041L15Rik-201ENSMUST00000080751 5917 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Pik3c3-201ENSMUST00000091978 2998 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Limk2-203ENSMUST00000101642 3693 ntAPPRIS ALT1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Trim2-201ENSMUST00000054990 3816 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Slc26a1-202ENSMUST00000119270 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Slc26a1-204ENSMUST00000163328 3015 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Gm20609-201ENSMUST00000177104 1527 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Olfr1212-202ENSMUST00000215781 3636 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Col1a1P11087 Aph1b-201ENSMUST00000034934 4910 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Hmgb1-201ENSMUST00000085546 2838 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Arfgef2-201ENSMUST00000099078 8770 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Gm11348-201ENSMUST00000118813 318 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 Gm15345-201ENSMUST00000128240 663 ntTSL 3 BASIC9.34□□□□□ -0.91
Col1a1P11087 C230035I16Rik-201ENSMUST00000141543 623 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 B230112G18Rik-201ENSMUST00000192979 851 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 Selenok-ps7-201ENSMUST00000197069 283 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 Lmo3-208ENSMUST00000203435 572 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Col1a1P11087 Gm5250-201ENSMUST00000059065 321 ntBASIC9.34□□□□□ -0.91
Col1a1P11087 Chn1-201ENSMUST00000070579 1023 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Col1a1P11087 Cep55-202ENSMUST00000116506 1440 ntAPPRIS P3 TSL 5 BASIC9.34□□□□□ -0.92
Col1a1P11087 Gm12743-201ENSMUST00000126668 3700 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Col1a1P11087 Adgrl3-218ENSMUST00000122037 4649 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm45793-201ENSMUST00000207900 1342 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Gm28670-201ENSMUST00000185365 1498 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm29537-202ENSMUST00000186153 1498 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm29497-201ENSMUST00000186801 1498 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm28568-201ENSMUST00000187762 1498 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm29445-202ENSMUST00000189947 1497 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm28458-202ENSMUST00000190542 1497 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm28457-202ENSMUST00000191277 1498 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm37654-201ENSMUST00000193019 1498 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm38056-201ENSMUST00000193928 5027 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Spic-201ENSMUST00000004473 1763 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm26920-201ENSMUST00000182746 2374 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
Col1a1P11087 Cdk15-202ENSMUST00000160662 2108 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Trio-210ENSMUST00000227337 6375 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 AC166159.1-201ENSMUST00000227154 1380 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Zfp148-201ENSMUST00000089677 4032 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Col1a1P11087 Vmn2r-ps99-202ENSMUST00000223517 2338 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Tmem268-202ENSMUST00000080336 3630 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Col1a1P11087 AC160562.1-201ENSMUST00000216170 3468 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Zfp819-201ENSMUST00000032661 2362 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Col1a1P11087 Zfp40-201ENSMUST00000037057 4103 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Col1a1P11087 Ctnnd1-207ENSMUST00000111676 5852 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Ighv1-31-201ENSMUST00000103511 294 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Col1a1P11087 Ighv1-37-201ENSMUST00000103514 348 ntAPPRIS ALT2 BASIC9.33□□□□□ -0.92
Col1a1P11087 Ighv1-42-201ENSMUST00000103516 294 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Col1a1P11087 Ighv1-43-201ENSMUST00000103517 294 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Col1a1P11087 Ighv1-66-201ENSMUST00000103537 399 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Col1a1P11087 Ighv1-75-201ENSMUST00000103544 373 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm23701-201ENSMUST00000103893 110 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Gm25757-201ENSMUST00000103986 123 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Ifna16-201ENSMUST00000105148 1010 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Col1a1P11087 Cga-202ENSMUST00000108130 609 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm13735-201ENSMUST00000120217 670 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Gm23776-201ENSMUST00000158993 325 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Gm6264-201ENSMUST00000160802 624 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Esd-203ENSMUST00000175887 809 ntTSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 1700034J04Rik-201ENSMUST00000192736 750 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Ighv1-29-201ENSMUST00000194116 342 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Gm42464-201ENSMUST00000196717 417 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 4930568A13Rik-201ENSMUST00000199961 1061 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Col1a1P11087 5033423K11Rik-202ENSMUST00000202802 1162 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Gm44764-202ENSMUST00000204912 671 ntTSL 3 BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm18860-201ENSMUST00000212029 764 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 AC106830.2-201ENSMUST00000226624 943 ntBASIC9.33□□□□□ -0.92
Col1a1P11087 Il17f-201ENSMUST00000039046 1178 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Col1a1P11087 Gm10160-201ENSMUST00000085094 201 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
Col1a1P11087 Npy2r-204ENSMUST00000182831 1689 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Col1a1P11087 Creb1-201ENSMUST00000049932 5009 ntTSL 5 BASIC9.32□□□□□ -0.92
Col1a1P11087 Nos1-207ENSMUST00000171055 4388 ntAPPRIS P2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Col1a1P11087 Gpr63-201ENSMUST00000038920 2370 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Col1a1P11087 Calcr-201ENSMUST00000075644 3763 ntAPPRIS P4 TSL 1 (best) BASIC9.32□□□□□ -0.92
Col1a1P11087 Med12l-206ENSMUST00000199659 11006 ntAPPRIS P2 TSL 5 BASIC9.32□□□□□ -0.92
Col1a1P11087 Ppfia1-202ENSMUST00000182226 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 75.4 ms